←Back to structures

PP034390.1__WRW34715.1__CF5_0062__00062

Bact-Vir

PP034390.1__WRW34715.1__CF5_0062__00062

Identity

Accession:
PP034390 ↗
Kingdom:
phage

Quality

94.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Silviavirus› Staphylococcus_phage_CF5

TaxID: 3113739

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-111
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05257.23 best CHAP 32.1 1.80e-07 100.0% 61.7%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.95 87.0 6.12e-01 100.0% 36.6%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.76 69.0 4.87e-01 100.0% 36.8%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.74 67.0 4.58e-01 100.0% 31.3%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.66 45.0 3.64e-01 71.4% 37.8%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 43.0 4.09e-01 71.4% 74.7%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 46.0 4.40e-01 85.7% 72.4%
3ckjA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 46.0 3.07e-01 95.2% 57.7%
1b12C01 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.56 49.0 3.98e-01 100.0% 52.9%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.53 37.0 3.32e-01 76.2% 51.6%
4yokA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.52 41.0 3.68e-01 88.9% 64.9%
2y69F00 2.60.11.10 Mainly Beta › Sandwich › Cytochrome C Oxidase; Chain F › Cytochrome c oxidase, subunit Vb 0.51 36.0 3.32e-01 79.4% 79.6%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1293874 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.92 83.0 5.89e-01 100.0% 36.4%
4576823 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.91 86.0 6.24e-01 100.0% 43.3%
4030940 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.89 81.0 5.86e-01 100.0% 39.4%
4796282 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.86 77.0 6.25e-01 100.0% 55.0%
3598532 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.75 68.0 4.67e-01 100.0% 33.7%
2389888 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 45.0 3.13e-01 71.4% 22.1%
3628131 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 49.0 4.26e-01 100.0% 52.0%
3670066 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.65 43.0 3.26e-01 71.4% 28.4%
3738332 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.65 44.0 3.24e-01 71.4% 30.4%
3751462 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 45.0 3.64e-01 76.2% 72.3%
3643317 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.63 42.0 3.94e-01 81.0% 55.0%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.62 40.0 3.83e-01 71.4% 56.0%
3753231 4.1.1.226 ↗ beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.62 43.0 4.04e-01 74.6% 62.5%
3576438 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 3.93e-01 100.0% 54.4%
3508441 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 46.0 4.07e-01 100.0% 57.9%
3560235 2004.1.1.184 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.58 50.0 3.00e-01 100.0% 27.1%
4427477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.15e-01 100.0% 63.2%
4565130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 48.0 4.19e-01 100.0% 63.2%
3702271 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.56 47.0 3.43e-01 100.0% 77.9%
3933131 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.55 49.0 3.96e-01 100.0% 62.5%
4544733 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.55 48.0 3.47e-01 100.0% 61.1%
5063188 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.55 44.0 3.17e-01 95.2% 82.3%
3959825 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 37.0 3.17e-01 73.0% 70.9%
1175747 4.1.1.109 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_13 0.54 44.0 4.34e-01 90.5% 93.9%
3594165 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 42.0 3.11e-01 88.9% 45.9%
3510207 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.53 36.0 2.65e-01 73.0% 34.7%
3355332 1.1.7.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.51 40.0 3.03e-01 88.9% 49.1%
3928030 5.1.4.235 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st 0.50 40.0 2.36e-01 90.5% 20.8%