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PP034390.1__WRW34727.1__CF5_0178__00178

Bact-Vir

PP034390.1__WRW34727.1__CF5_0178__00178

Identity

Accession:
PP034390 ↗
Kingdom:
phage

Quality

81.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-97
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3w7tA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.73 60.0 4.39e-01 87.9% 86.6%
4a18P00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.70 35.0 4.10e-01 84.6% 66.7%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 42.0 5.23e-01 94.5% 98.2%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.69 59.0 5.17e-01 93.4% 83.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 57.0 4.98e-01 90.1% 98.5%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.68 54.0 4.47e-01 83.5% 83.0%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 57.0 4.78e-01 90.1% 94.6%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 55.0 4.82e-01 87.9% 98.5%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 55.0 4.82e-01 91.2% 99.3%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 36.0 4.23e-01 90.1% 76.9%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.65 50.0 3.97e-01 82.4% 89.9%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.65 44.0 4.55e-01 75.8% 75.0%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 50.0 3.16e-01 84.6% 50.0%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.63 46.0 3.71e-01 89.0% 40.9%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.63 50.0 4.42e-01 86.8% 85.2%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 50.0 4.46e-01 87.9% 100.0%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.62 37.0 4.36e-01 93.4% 90.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 38.0 4.45e-01 97.8% 90.5%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.61 51.0 4.66e-01 91.2% 84.4%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 54.0 4.74e-01 100.0% 88.4%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.61 55.0 4.60e-01 100.0% 80.9%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 30.0 3.41e-01 83.5% 60.6%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.61 38.0 4.25e-01 82.4% 81.7%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 41.0 3.66e-01 70.3% 68.9%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.60 48.0 4.69e-01 86.8% 88.0%
3a46A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.59 55.0 4.72e-01 100.0% 74.3%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 50.0 4.33e-01 92.3% 75.0%
4mb7A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.58 54.0 4.80e-01 100.0% 73.8%
3p0lD00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 50.0 4.00e-01 95.6% 66.5%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.57 50.0 4.77e-01 97.8% 98.1%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 48.0 4.68e-01 98.9% 84.0%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 28.0 3.79e-01 82.4% 95.6%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 50.0 4.77e-01 100.0% 84.6%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 29.0 3.62e-01 89.0% 91.3%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 49.0 4.71e-01 100.0% 84.5%
7wvzA03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.56 46.0 3.29e-01 89.0% 46.7%
1m61A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 44.0 4.27e-01 94.5% 76.9%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 47.0 4.10e-01 97.8% 86.2%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 40.0 3.78e-01 95.6% 65.4%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.54 46.0 3.78e-01 92.3% 54.7%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 38.0 3.66e-01 72.5% 88.2%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.54 47.0 3.78e-01 96.7% 51.1%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 41.0 3.81e-01 83.5% 80.0%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 41.0 3.82e-01 83.5% 80.0%
2rqxA00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 34.0 3.56e-01 82.4% 71.6%
5ee2A00 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.53 46.0 4.20e-01 97.8% 96.7%
2kgyA00 3.30.505.20 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › 0.52 36.0 3.62e-01 93.4% 70.7%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.71e-01 91.2% 65.5%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.52 43.0 4.10e-01 91.2% 85.7%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 38.0 3.45e-01 80.2% 90.8%
1gjwA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 36.0 3.97e-01 89.0% 98.5%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.51 42.0 3.04e-01 97.8% 92.5%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.50 40.0 2.81e-01 89.0% 45.9%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.50 44.0 4.32e-01 97.8% 99.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2717534 12.3.1.31 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YgjK_N 0.73 60.0 4.17e-01 87.9% 71.8%
5010773 12.3.1.74 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GDE_N 0.70 57.0 4.25e-01 87.9% 93.9%
3487462 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.70 58.0 5.06e-01 86.8% 99.2%
4668044 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.69 59.0 5.10e-01 90.1% 100.0%
3941391 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 43.0 5.19e-01 100.0% 95.0%
5014493 331.3.1.12 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.69 62.0 4.58e-01 98.9% 71.7%
5003053 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.68 54.0 4.46e-01 83.5% 83.9%
3222106 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 41.0 3.76e-01 70.3% 45.8%
4964966 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.67 52.0 4.36e-01 83.5% 83.9%
5054046 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.66 43.0 5.11e-01 76.9% 100.0%
5004050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 39.0 4.41e-01 100.0% 77.1%
3972685 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.64 54.0 4.62e-01 93.4% 80.0%
3929502 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.64 43.0 4.27e-01 78.0% 66.0%
3990496 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.63 45.0 5.03e-01 92.3% 97.1%
3252765 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.63 41.0 3.58e-01 71.4% 43.7%
4168653 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.63 35.0 4.48e-01 89.0% 100.0%
3385864 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.63 35.0 4.30e-01 82.4% 85.0%
3970566 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 54.0 4.32e-01 93.4% 99.4%
4285199 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.62 51.0 5.02e-01 91.2% 83.2%
3619927 9.2.1.6 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF7042 0.62 50.0 4.66e-01 87.9% 93.9%
4014982 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.61 47.0 3.23e-01 81.3% 42.0%
3953943 9.27.1.1 beta barrels › Lipocalins/Streptavidin › LpqH › LpqH › Myco_19_kDa 0.61 50.0 4.75e-01 90.1% 97.3%
4046583 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.61 54.0 4.82e-01 100.0% 90.8%
3239880 4099.1.1.29 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29306 0.61 54.0 4.78e-01 100.0% 70.4%
3743129 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.60 49.0 4.70e-01 100.0% 77.1%
3789023 3504.2.1.1 beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.60 56.0 4.60e-01 100.0% 74.2%
5032559 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 46.0 4.68e-01 83.5% 98.9%
3239519 4099.1.1.29 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29306 0.60 53.0 4.60e-01 100.0% 66.2%
1833882 9.4.1.3 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › Pab87_oct 0.60 48.0 4.82e-01 86.8% 94.6%
4481026 4.1.1.407 beta barrels › SH3 › SH3 › SH3 › PF29661 0.59 37.0 4.31e-01 96.7% 95.0%
3574513 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.59 46.0 3.58e-01 83.5% 50.8%
4003998 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.57 47.0 4.22e-01 91.2% 82.3%
3935139 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 48.0 4.14e-01 100.0% 57.9%
3912111 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 49.0 4.60e-01 98.9% 75.7%
3599709 9.5.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B 0.57 45.0 3.70e-01 87.9% 76.6%
3914746 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.56 35.0 3.87e-01 97.8% 80.0%
4033403 3504.2.1.1 beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.56 52.0 4.34e-01 100.0% 78.0%
3732787 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 42.0 2.88e-01 80.2% 46.9%
4602126 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 48.0 4.59e-01 100.0% 80.0%
4001579 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 47.0 4.44e-01 95.6% 95.7%
3601821 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 43.0 2.54e-01 82.4% 17.8%
3769735 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 46.0 4.48e-01 100.0% 84.0%
6329 331.3.1.10 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AtaL 0.55 47.0 4.09e-01 97.8% 85.6%
3528669 3338.2.1.0 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.53 42.0 4.10e-01 91.2% 77.7%
5019907 5.1.5.233 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PD40 0.53 43.0 3.06e-01 91.2% 71.1%
5018282 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 43.0 3.05e-01 93.4% 45.6%
3588663 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.52 43.0 4.26e-01 90.1% 100.0%
3798803 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 42.0 2.96e-01 94.5% 26.6%
3870987 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.51 41.0 4.11e-01 91.2% 90.5%
5013018 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 43.0 3.89e-01 95.6% 76.9%
3236186 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.51 41.0 4.07e-01 95.6% 88.4%