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PP034390.1__WRW34771.1__CF5_0043__00043

Bact-Vir

PP034390.1__WRW34771.1__CF5_0043__00043

Identity

Accession:
PP034390 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Silviavirus› Staphylococcus_phage_CF5

TaxID: 3113739

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-48
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dnnA00 1.20.5.4010 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.85 70.0 6.47e-01 100.0% 72.0%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.80 68.0 5.69e-01 100.0% 55.7%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.73 61.0 5.16e-01 100.0% 56.3%
5mmjb02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 55.0 5.18e-01 100.0% 73.1%
2x1lB02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.67 53.0 4.39e-01 97.4% 47.4%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 55.0 4.93e-01 100.0% 67.8%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.66 46.0 3.71e-01 89.7% 38.7%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.66 54.0 4.40e-01 94.9% 84.6%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 52.0 4.73e-01 100.0% 66.7%
3mgdB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 53.0 3.58e-01 94.9% 73.7%
2yfkA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.64 52.0 3.38e-01 97.4% 40.8%
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 51.0 4.44e-01 100.0% 93.8%
2hs5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 3.92e-01 84.6% 74.6%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 47.0 4.38e-01 100.0% 67.9%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.58 48.0 4.28e-01 100.0% 63.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049144 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.92 82.0 4.89e-01 100.0% 16.0%
2476070 616.1.1.3 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Flu_NS1 0.85 71.0 7.25e-01 94.9% 97.4%
1176726 4325.1.1.2 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › P53_C 0.75 64.0 5.38e-01 100.0% 56.3%
5020290 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.72 62.0 5.57e-01 100.0% 70.9%
4989401 4146.1.1.19 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › TSP3_bac 0.70 63.0 5.42e-01 100.0% 93.3%
3947564 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.69 58.0 5.03e-01 100.0% 61.5%