←Back to structures

PPR_Contig_984988_prodigal-single.1__X__X__00001

Bact-Vir

PPR_Contig_984988_prodigal-single.1__X__X__00001

Identity

Kingdom:
phage

Quality

87.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-53
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF07661.20 best MORN_2 26.0 8.50e-06 45.8% 100.0%
PF07661.20 MORN_2 11.9 3.30e-01 43.8% 81.8%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.77 68.0 4.86e-01 100.0% 35.5%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.74 59.0 3.26e-01 100.0% 6.3%
1mufA01 2.20.110.10 Mainly Beta › Single Sheet › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 0.73 62.0 4.81e-01 100.0% 43.4%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.71 61.0 4.72e-01 100.0% 55.0%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.69 59.0 4.79e-01 100.0% 58.2%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 54.0 4.09e-01 93.8% 36.8%
1wp0A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.67 51.0 3.54e-01 83.3% 80.6%
2b7jB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.66 50.0 3.44e-01 83.3% 77.8%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.61 52.0 3.79e-01 100.0% 60.0%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 49.0 2.97e-01 93.8% 93.5%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 50.0 3.63e-01 100.0% 48.6%
2dyuA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.58 49.0 3.07e-01 97.9% 66.0%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 47.0 2.89e-01 93.8% 14.0%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.57 49.0 3.98e-01 93.8% 55.2%
2iecD00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.57 47.0 3.54e-01 91.7% 51.3%
3dhpA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 49.0 4.00e-01 100.0% 97.8%
3wuyA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.57 50.0 3.07e-01 97.9% 43.2%
2fp8B00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 46.0 2.86e-01 93.8% 40.3%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.56 47.0 4.05e-01 97.9% 74.1%
3uhjC01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 44.0 3.16e-01 89.6% 69.7%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.79e-01 100.0% 29.3%
1erzA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.55 46.0 2.89e-01 100.0% 73.6%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.55 47.0 4.22e-01 95.8% 67.6%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.55 39.0 4.09e-01 77.1% 88.6%
3p8kA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.55 46.0 2.97e-01 100.0% 23.5%
1birA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.54 44.0 3.51e-01 93.8% 76.0%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.53 44.0 2.73e-01 100.0% 20.1%
6zbyD01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.52 41.0 2.70e-01 100.0% 28.5%
3vskA01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.52 37.0 3.01e-01 91.7% 94.0%
5h8iI00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.52 43.0 2.76e-01 100.0% 71.0%
4pe5B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 42.0 3.00e-01 100.0% 93.5%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 39.0 2.49e-01 100.0% 26.3%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 39.0 2.92e-01 100.0% 89.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976807 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 1.00 95.0 5.87e-01 100.0% 21.8%
3965839 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.99 95.0 6.30e-01 100.0% 31.0%
3386526 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.99 94.0 6.15e-01 100.0% 29.1%
3968348 77.2.1.5 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN_2 0.98 93.0 6.15e-01 100.0% 30.0%
5081937 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.98 93.0 7.14e-01 100.0% 50.5%
3976809 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.95 89.0 5.79e-01 100.0% 27.4%
3287702 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.94 86.0 6.33e-01 100.0% 41.7%
3965131 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.91 77.0 6.15e-01 100.0% 48.9%
4050277 77.2.1.4 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN+SET7_N 0.81 71.0 4.75e-01 100.0% 26.9%
4467854 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.81 70.0 4.03e-01 100.0% 10.9%
4348598 3894.1.1.6 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Glyco_trans_A_1 0.79 69.0 4.96e-01 100.0% 37.8%
3760058 77.2.1.4 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN+SET7_N 0.76 66.0 4.62e-01 100.0% 31.3%
1498413 3894.1.1.0 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain 0.75 65.0 4.81e-01 100.0% 38.3%
4031984 3894.1.1.1 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.75 66.0 4.84e-01 100.0% 39.2%
2723017 3894.1.1.0 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain 0.75 63.0 4.77e-01 100.0% 38.7%
2722572 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.75 65.0 4.71e-01 100.0% 38.5%
2162624 3894.1.1.1 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.75 65.0 4.80e-01 100.0% 38.1%
4226766 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.74 65.0 4.76e-01 100.0% 38.5%
4200177 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.73 64.0 4.71e-01 100.0% 40.8%
3755983 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.73 63.0 5.02e-01 95.8% 52.6%
1780243 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.72 62.0 3.92e-01 100.0% 21.0%
3943894 77.1.1.7 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 0.71 61.0 4.56e-01 100.0% 42.4%
4008120 5.1.5.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 0.71 61.0 4.60e-01 100.0% 44.2%
3716096 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.70 60.0 4.36e-01 100.0% 34.1%
3607875 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.70 59.0 4.32e-01 100.0% 34.8%
3709361 3523.1.1.4 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › MORN 0.70 57.0 4.43e-01 100.0% 40.0%
3615285 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.69 60.0 4.69e-01 100.0% 46.0%
3598916 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.69 60.0 3.98e-01 100.0% 25.6%
3591979 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.67 57.0 4.09e-01 100.0% 31.6%
3479716 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.64 52.0 4.37e-01 100.0% 51.8%
3605869 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.64 53.0 3.40e-01 100.0% 19.2%
5072279 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.64 55.0 3.25e-01 100.0% 27.4%
3391245 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.63 52.0 3.70e-01 97.9% 49.7%
3601903 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.62 54.0 3.73e-01 100.0% 29.4%
3593136 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.62 49.0 3.47e-01 97.9% 25.7%
3531694 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.61 51.0 3.33e-01 100.0% 18.8%
4030440 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.61 50.0 3.27e-01 100.0% 19.2%
3240119 243.1.1.75 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.61 46.0 3.53e-01 87.5% 37.1%
3167601 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.58 49.0 4.02e-01 100.0% 53.7%
3595247 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.58 49.0 3.69e-01 100.0% 36.9%
4931141 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.58 41.0 3.72e-01 72.9% 56.9%
147742 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.58 47.0 2.87e-01 93.8% 13.5%
3288025 5.1.3.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PhoX 0.58 50.0 2.97e-01 97.9% 22.5%
3756866 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.57 47.0 3.87e-01 100.0% 48.0%
3713206 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.57 46.0 3.49e-01 100.0% 34.8%
3165551 375.1.1.38 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Topo_Zn_Ribbon 0.57 38.0 3.70e-01 72.9% 98.3%
3311784 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.56 47.0 3.61e-01 100.0% 39.2%
3873939 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.56 50.0 3.31e-01 100.0% 24.7%
3701923 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.56 46.0 3.56e-01 100.0% 38.4%
145016 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.54 45.0 2.92e-01 100.0% 23.5%
3283108 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.53 45.0 2.82e-01 100.0% 73.1%
4975236 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.52 43.0 3.85e-01 87.5% 81.5%
3221377 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.51 42.0 3.34e-01 100.0% 55.7%
4955836 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.51 40.0 2.72e-01 100.0% 25.4%
3987711 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.50 41.0 2.54e-01 95.8% 30.3%
2754408 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 41.0 3.04e-01 89.6% 37.0%