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PPR_Contig_984988_prodigal-single.1__X__X__00010
Bact-VirPPR_Contig_984988_prodigal-single.1__X__X__00010
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-92
Domain cluster:
rep: rifcsplowo2_12_scaffold_23_prodigal-single.1__X__X__00063__D3-66_167-206
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5o5jC01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.72 | 50.0 | 5.09e-01 | 73.3% | 90.0% |
| 1vkwA02 | 3.40.109.30 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › putative nitroreductase (tm1586), domain 2 | 0.65 | 49.0 | 4.86e-01 | 90.0% | 76.0% |
| 4wovA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 32.0 | 3.39e-01 | 78.9% | 54.8% |
| 1vehA01 | 3.30.300.130 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) | 0.62 | 43.0 | 4.59e-01 | 72.2% | 88.0% |
| 2kgsA01 | 3.40.1520.20 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › | 0.60 | 51.0 | 4.80e-01 | 97.8% | 77.3% |
| 2mj7A00 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.59 | 47.0 | 4.14e-01 | 90.0% | 82.3% |
| 3k0zA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 49.0 | 4.11e-01 | 92.2% | 83.9% |
| 3g0kA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 39.0 | 3.49e-01 | 70.0% | 78.9% |
| 3en8A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 39.0 | 3.68e-01 | 71.1% | 89.3% |
| 2vh2A02 | 3.40.50.11690 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cell division protein FtsQ/DivIB | 0.57 | 40.0 | 3.61e-01 | 74.4% | 61.1% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 37.0 | 3.95e-01 | 70.0% | 80.3% |
| 1xl7A02 | 3.30.559.70 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Choline/Carnitine o-acyltransferase, domain 2 | 0.55 | 49.0 | 3.41e-01 | 100.0% | 75.3% |
| 4u9rA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 37.0 | 3.92e-01 | 70.0% | 76.8% |
| 1nu3A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 41.0 | 3.53e-01 | 80.0% | 83.4% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.55 | 38.0 | 4.19e-01 | 73.3% | 95.8% |
| 2xd3A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 43.0 | 3.50e-01 | 87.8% | 92.3% |
| 3pf7B00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.54 | 47.0 | 3.07e-01 | 100.0% | 60.2% |
| 5b4wA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 45.0 | 2.97e-01 | 95.6% | 32.7% |
| 4ks7A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 39.0 | 3.86e-01 | 77.8% | 98.0% |
| 3s95A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 31.0 | 3.21e-01 | 78.9% | 59.1% |
| 7mi4A01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.53 | 44.0 | 3.45e-01 | 90.0% | 49.7% |
| 4bjzA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 47.0 | 3.88e-01 | 100.0% | 87.5% |
| 3fxzA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 38.0 | 3.76e-01 | 76.7% | 99.0% |
| 3fkaB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 36.0 | 3.28e-01 | 70.0% | 89.2% |
| 1q9jB02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.53 | 43.0 | 3.45e-01 | 91.1% | 97.8% |
| 7o06C01 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.53 | 44.0 | 4.47e-01 | 91.1% | 90.1% |
| 7r9xA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.52 | 44.0 | 3.28e-01 | 94.4% | 90.2% |
| 3k93A00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.51 | 41.0 | 3.13e-01 | 88.9% | 42.6% |
| 1ir3A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 32.0 | 3.20e-01 | 78.9% | 60.0% |
| 4ic1D00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.51 | 44.0 | 3.38e-01 | 95.6% | 63.1% |
| 3a7fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 35.0 | 3.53e-01 | 71.1% | 100.0% |
| 2ovrB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 44.0 | 3.04e-01 | 98.9% | 33.0% |
| 6le1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 34.0 | 3.79e-01 | 100.0% | 92.6% |
| 3lq9A00 | 3.90.470.40 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › RTP801-like | 0.51 | 41.0 | 3.66e-01 | 88.9% | 91.4% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4947001 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.61 | 48.0 | 5.02e-01 | 94.4% | 93.8% |
| 3989509 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.61 | 50.0 | 4.67e-01 | 88.9% | 77.3% |
| 4934961 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.57 | 46.0 | 4.39e-01 | 87.8% | 87.6% |
| 5031798 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.57 | 45.0 | 4.42e-01 | 87.8% | 90.0% |
| 3963057 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.56 | 38.0 | 3.15e-01 | 70.0% | 95.2% |
| 3664834 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.56 | 46.0 | 3.09e-01 | 91.1% | 56.5% |
| 4383552 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.55 | 37.0 | 2.81e-01 | 70.0% | 92.2% |
| 3599245 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.55 | 48.0 | 3.36e-01 | 98.9% | 59.7% |
| 5055193 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.53 | 43.0 | 4.22e-01 | 90.0% | 87.0% |
| 4959669 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 44.0 | 3.21e-01 | 88.9% | 60.8% |
| 4955137 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.53 | 43.0 | 3.44e-01 | 87.8% | 45.0% |
| 4928507 | 327.18.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A | 0.53 | 43.0 | 3.60e-01 | 88.9% | 54.1% |
| 3712123 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 43.0 | 2.95e-01 | 91.1% | 61.3% |
| 5045446 | 327.18.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A | 0.53 | 42.0 | 4.20e-01 | 88.9% | 87.4% |
| 4453273 | 6020.1.1.1 ↗ | a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C | 0.53 | 45.0 | 3.93e-01 | 98.9% | 60.7% |
| 4506641 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.53 | 37.0 | 3.76e-01 | 73.3% | 88.2% |
| 5060524 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.52 | 43.0 | 3.33e-01 | 90.0% | 52.2% |
| 3493378 | 5.1.4.179 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 | 0.52 | 44.0 | 2.99e-01 | 94.4% | 34.7% |
| 4949202 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.52 | 45.0 | 3.32e-01 | 97.8% | 90.6% |
| 5042453 | 327.18.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A › KH_5 | 0.52 | 43.0 | 4.25e-01 | 93.3% | 91.6% |
| 3452256 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.52 | 42.0 | 2.93e-01 | 91.1% | 60.3% |
| 1171261 | 2003.1.2.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox | 0.52 | 35.0 | 3.27e-01 | 70.0% | 95.7% |
| 4943705 | 327.18.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A | 0.52 | 43.0 | 4.29e-01 | 94.4% | 90.5% |
| 3310651 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.51 | 43.0 | 3.05e-01 | 94.4% | 54.0% |
| 3397653 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.51 | 41.0 | 4.02e-01 | 88.9% | 95.0% |
| 5056632 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.51 | 42.0 | 3.10e-01 | 90.0% | 57.5% |
| 3968916 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.51 | 36.0 | 3.43e-01 | 73.3% | 83.8% |
| 3259806 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.51 | 43.0 | 3.00e-01 | 98.9% | 27.3% |
| 3671474 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.50 | 41.0 | 2.90e-01 | 94.4% | 46.5% |
| 5045797 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.50 | 40.0 | 3.18e-01 | 87.8% | 45.8% |