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PPR_Contig_984988_prodigal-single.1__X__X__00035

Bact-Vir

PPR_Contig_984988_prodigal-single.1__X__X__00035

Identity

Kingdom:
phage

Quality

79.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-78
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 48.0 5.05e-01 93.2% 76.9%
5egwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.71 63.0 4.03e-01 100.0% 25.1%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 5.45e-01 100.0% 94.8%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 4.85e-01 95.9% 74.6%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 5.43e-01 100.0% 95.2%
3pw3D00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 60.0 3.88e-01 100.0% 31.7%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.68 45.0 5.11e-01 81.1% 96.2%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.78e-01 95.9% 73.6%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.68 45.0 4.97e-01 79.7% 89.3%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 5.00e-01 100.0% 75.0%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 5.43e-01 100.0% 95.7%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 46.0 4.93e-01 79.7% 88.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.90e-01 100.0% 88.7%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.63 54.0 5.07e-01 100.0% 77.4%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.87e-01 86.5% 91.9%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.62 56.0 4.44e-01 100.0% 80.7%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.62 56.0 4.42e-01 100.0% 57.0%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.62 55.0 5.15e-01 100.0% 88.9%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.86e-01 100.0% 88.9%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 5.11e-01 94.6% 97.1%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 54.0 3.79e-01 100.0% 35.5%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.59 52.0 4.19e-01 98.6% 52.7%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 54.0 4.06e-01 100.0% 46.2%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 51.0 4.15e-01 100.0% 72.4%
1k4nA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 39.0 2.98e-01 70.3% 50.8%
2z84A00 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 50.0 3.66e-01 100.0% 39.0%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 49.0 4.05e-01 100.0% 74.5%
2sfaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 46.0 4.37e-01 90.5% 80.2%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 48.0 3.53e-01 97.3% 46.3%
3r4qA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 35.0 2.94e-01 95.9% 37.1%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 46.0 3.93e-01 100.0% 89.0%
1ejeA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.12e-01 87.8% 68.8%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.09e-01 87.8% 65.5%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.22e-01 87.8% 77.9%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.24e-01 86.5% 78.1%
1yoaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.27e-01 87.8% 81.1%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 43.0 3.65e-01 97.3% 88.9%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.22e-01 87.8% 77.1%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 44.0 3.73e-01 100.0% 93.9%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 38.0 3.18e-01 85.1% 78.7%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.56e-01 98.6% 94.4%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.24e-01 87.8% 80.8%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.70e-01 98.6% 95.2%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 43.0 3.32e-01 100.0% 82.2%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.89 74.0 6.58e-01 100.0% 65.0%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.85 64.0 6.76e-01 97.3% 89.2%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.81 66.0 5.76e-01 100.0% 59.3%
5080798 4.17.1.0 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like 0.80 65.0 6.54e-01 91.9% 85.3%
5034832 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 64.0 6.64e-01 97.3% 94.3%
3629536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 55.0 5.05e-01 100.0% 62.1%
3507146 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 53.0 5.08e-01 100.0% 67.1%
4152374 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 66.0 6.31e-01 100.0% 86.9%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 65.0 6.31e-01 100.0% 91.3%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 48.0 5.09e-01 93.2% 80.0%
4387111 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 64.0 6.28e-01 100.0% 91.3%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 51.0 5.24e-01 100.0% 81.4%
3495447 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 53.0 4.51e-01 98.6% 50.0%
3491615 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.70 52.0 3.64e-01 98.6% 24.0%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 61.0 5.86e-01 100.0% 84.7%
4387099 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 62.0 6.08e-01 100.0% 91.3%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.69 48.0 5.09e-01 97.3% 84.4%
3923766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 60.0 5.19e-01 100.0% 77.4%
3935716 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 51.0 5.17e-01 100.0% 82.7%
5017073 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.66 48.0 3.85e-01 100.0% 38.0%
3995290 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.66 59.0 5.19e-01 100.0% 87.3%
4929262 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.66 52.0 4.11e-01 100.0% 41.3%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 52.0 5.22e-01 97.3% 88.0%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 49.0 5.00e-01 100.0% 88.6%
4964768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.97e-01 100.0% 95.0%
3582876 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.64 49.0 4.37e-01 100.0% 58.1%
3629455 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.64 58.0 4.23e-01 100.0% 60.5%
3793962 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.64 48.0 4.52e-01 98.6% 66.7%
3334435 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.63 56.0 4.44e-01 100.0% 72.3%
5024617 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.63 55.0 5.13e-01 100.0% 80.0%
3889197 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.63 57.0 4.31e-01 100.0% 69.4%
4312484 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.63 43.0 3.85e-01 71.6% 52.4%
3585538 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.62 48.0 4.39e-01 100.0% 62.0%
3454181 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.62 56.0 4.19e-01 100.0% 48.9%
3824811 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.62 56.0 4.35e-01 100.0% 54.8%
4020096 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 53.0 4.41e-01 100.0% 60.7%
3607981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.91e-01 100.0% 87.8%
3495649 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.65e-01 86.5% 96.5%
4026274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.12e-01 100.0% 48.6%
3210653 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.63e-01 95.9% 86.2%
3460287 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.61 55.0 4.25e-01 100.0% 67.5%
3823515 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.61 55.0 4.28e-01 100.0% 71.0%
4349149 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 54.0 5.09e-01 100.0% 96.7%
3575867 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.61 54.0 4.42e-01 100.0% 60.9%
3550047 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.60 54.0 4.11e-01 100.0% 56.5%
4114383 4.8.1.47 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › zf_CCCH_4 0.60 48.0 4.61e-01 89.2% 94.1%
3870945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 3.89e-01 100.0% 48.0%
4530545 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.60 50.0 4.63e-01 94.6% 88.4%
None — 0.59 53.0 4.05e-01 100.0% 59.4%
3927213 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.59 47.0 4.83e-01 100.0% 91.4%
7380 219.1.1.34 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 0.59 54.0 4.06e-01 100.0% 46.2%
3510024 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.59 52.0 4.62e-01 100.0% 80.9%
4383895 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 49.0 3.36e-01 100.0% 30.3%
3836457 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.58 52.0 4.13e-01 100.0% 55.3%
3670066 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.58 52.0 4.08e-01 100.0% 50.3%
3474784 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.58 52.0 3.93e-01 100.0% 58.3%
3908017 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.58 47.0 4.63e-01 100.0% 83.7%
3894729 4.1.1.461 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH 0.58 50.0 4.69e-01 97.3% 92.2%
3176265 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.57 48.0 3.84e-01 100.0% 45.2%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.57 47.0 3.75e-01 100.0% 43.1%
3501834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.73e-01 98.6% 92.9%
4960051 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 49.0 3.74e-01 95.9% 53.4%
3999482 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.57 50.0 4.41e-01 100.0% 82.7%
3283078 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 48.0 3.95e-01 100.0% 94.0%
5063003 4.1.1.120 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_16 0.56 42.0 4.37e-01 81.1% 95.7%
3521904 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.57e-01 100.0% 82.1%
3683487 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.56 49.0 3.77e-01 100.0% 48.0%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.63e-01 100.0% 86.7%
3785886 1.1.5.18 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.56 47.0 3.57e-01 100.0% 80.0%
3621303 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.00e-01 100.0% 61.5%
3491784 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.55 44.0 3.82e-01 93.2% 72.8%
5031837 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.53 45.0 3.10e-01 97.3% 49.1%
1725861 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 41.0 3.09e-01 87.8% 65.5%
5048078 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 44.0 3.44e-01 98.6% 75.4%
4512371 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 39.0 3.17e-01 86.5% 78.1%
3877687 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 40.0 3.33e-01 87.8% 75.4%