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PPR_Contig_984988_prodigal-single.1__X__X__00037

Bact-Vir

PPR_Contig_984988_prodigal-single.1__X__X__00037

Identity

Kingdom:
phage

Quality

83.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-70
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hkxA04 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.80 32.0 3.87e-01 77.8% 54.5%
1dfxA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.66 47.0 3.71e-01 74.6% 91.2%
3ztvA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.57 44.0 2.76e-01 84.1% 20.1%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 34.0 2.46e-01 84.1% 23.5%
1w36C01 3.40.50.10930 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 37.0 2.66e-01 76.2% 27.2%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4645846 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.67 57.0 4.21e-01 95.2% 58.2%
5042462 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.66 60.0 4.37e-01 100.0% 63.6%
5035395 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.65 58.0 4.27e-01 100.0% 60.6%
4329890 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.65 52.0 3.99e-01 88.9% 61.3%
4241167 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.65 58.0 4.24e-01 100.0% 66.5%
4970576 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.64 58.0 4.13e-01 100.0% 57.8%
4221024 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 55.0 3.87e-01 98.4% 70.2%
4507638 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.63 56.0 4.15e-01 100.0% 64.2%
3333934 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 56.0 5.00e-01 96.8% 94.1%
4239635 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.63 55.0 4.10e-01 100.0% 63.0%
4527101 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.63 54.0 4.08e-01 98.4% 65.0%
4478999 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.62 55.0 4.01e-01 100.0% 60.7%
4943395 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 55.0 4.01e-01 100.0% 63.5%
4985036 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.61 51.0 3.79e-01 95.2% 56.5%
4344487 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.61 53.0 3.96e-01 100.0% 66.1%
4930596 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.60 53.0 3.92e-01 100.0% 64.7%
1489496 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.59 52.0 4.43e-01 96.8% 80.2%
4646072 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.58 50.0 3.73e-01 100.0% 62.9%
5023773 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.58 47.0 3.38e-01 87.3% 38.9%
4403519 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 51.0 3.75e-01 100.0% 61.8%
2042925 208.1.1.7 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_loop 0.57 46.0 3.10e-01 90.5% 34.0%
5028348 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.56 44.0 3.02e-01 82.5% 88.2%
3235875 376.1.4.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.56 39.0 3.86e-01 74.6% 100.0%
4248590 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 47.0 4.10e-01 88.9% 71.1%
4456198 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 45.0 3.18e-01 85.7% 29.2%
3787718 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.56 46.0 4.03e-01 90.5% 84.2%
4995952 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 45.0 4.08e-01 88.9% 75.3%
4546356 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 47.0 4.26e-01 98.4% 70.6%
3779926 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.54 39.0 3.85e-01 85.7% 71.2%
4947925 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 47.0 3.53e-01 100.0% 63.8%
3929687 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.53 36.0 3.66e-01 71.4% 70.8%
4001214 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.52 45.0 4.00e-01 95.2% 71.1%
3831781 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.50 40.0 3.68e-01 98.4% 67.5%
3216198 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 42.0 3.75e-01 92.1% 66.7%