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PPR_Contig_984988_prodigal-single.1__X__X__00048
Bact-VirPPR_Contig_984988_prodigal-single.1__X__X__00048
Identity
- Kingdom:
- phage
Quality
76.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 39-85
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cukA03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.69 | 50.0 | 4.98e-01 | 76.6% | 93.8% |
| 3e3vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 45.0 | 4.35e-01 | 78.7% | 60.4% |
| 3ugjA02 | 1.10.8.750 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phosphoribosylformylglycinamidine synthase, linker domain | 0.66 | 46.0 | 4.19e-01 | 78.7% | 54.8% |
| 4xomB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.65 | 46.0 | 2.98e-01 | 74.5% | 46.8% |
| 2gpeD01 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.65 | 44.0 | 4.71e-01 | 89.4% | 84.6% |
| 4a55A01 | 3.10.20.770 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 44.0 | 2.66e-01 | 78.7% | 11.9% |
| 1nh2B00 | 1.10.287.100 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 41.0 | 4.14e-01 | 74.5% | 73.9% |
| 4griA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.59 | 43.0 | 4.19e-01 | 83.0% | 96.2% |
| 6ygiB01 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.58 | 43.0 | 3.28e-01 | 93.6% | 90.4% |
| 3jr7A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.57 | 44.0 | 3.32e-01 | 85.1% | 69.5% |
| 1l5jA03 | 3.40.1060.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 | 0.57 | 42.0 | 2.89e-01 | 83.0% | 54.9% |
| 4p17A02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.55 | 46.0 | 3.60e-01 | 97.9% | 80.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929157 | 3469.1.1.0 ↗ | extended segments › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) | 0.90 | 60.0 | 6.85e-01 | 70.2% | 100.0% |
| 3781724 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.89 | 67.0 | 6.90e-01 | 80.9% | 84.4% |
| 4971366 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 48.0 | 4.06e-01 | 93.6% | 42.7% |
| 4934943 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.67 | 46.0 | 3.81e-01 | 72.3% | 54.1% |
| 5033689 | 101.1.2.368 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_36 | 0.67 | 49.0 | 4.56e-01 | 78.7% | 90.0% |
| 4499881 | 3431.1.1.1 ↗ | alpha bundles › Helical domain in autophagy protein 5 › Helical domain in autophagy protein 5 › Helical domain in autophagy protein 5 › ATG5_HBR | 0.64 | 48.0 | 4.21e-01 | 80.9% | 62.9% |
| 4511884 | 4082.1.1.1 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange | 0.64 | 41.0 | 4.24e-01 | 70.2% | 68.9% |
| 4948444 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.61 | 54.0 | 3.55e-01 | 100.0% | 28.4% |
| 3190824 | 166.1.1.0 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C | 0.60 | 48.0 | 4.10e-01 | 87.2% | 92.0% |