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PPR_Contig_984988_prodigal-single.1__X__X__00066
Bact-VirPPR_Contig_984988_prodigal-single.1__X__X__00066
Identity
- Kingdom:
- phage
Quality
77.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-67
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f1fA02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.76 | 60.0 | 5.68e-01 | 96.9% | 71.8% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.73 | 53.0 | 5.34e-01 | 95.4% | 76.1% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.73 | 53.0 | 5.25e-01 | 95.4% | 73.9% |
| 2dt9A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 55.0 | 5.23e-01 | 96.9% | 86.1% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.65 | 53.0 | 5.17e-01 | 96.9% | 83.1% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.64 | 54.0 | 4.94e-01 | 96.9% | 73.3% |
| 2hfvA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.64 | 54.0 | 5.14e-01 | 95.4% | 92.2% |
| 3mahA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.64 | 54.0 | 5.31e-01 | 95.4% | 91.3% |
| 1rzmA01 | 3.30.70.1140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 | 0.63 | 50.0 | 4.76e-01 | 96.9% | 73.8% |
| 3b46A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 53.0 | 3.98e-01 | 98.5% | 56.8% |
| 1in0A01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 50.0 | 4.94e-01 | 95.4% | 87.1% |
| 2mkyA00 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.62 | 48.0 | 5.06e-01 | 89.2% | 98.3% |
| 3f0zA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.61 | 42.0 | 3.51e-01 | 73.8% | 66.1% |
| 4cclA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.60 | 50.0 | 3.75e-01 | 95.4% | 42.9% |
| 5eupA00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.59 | 45.0 | 3.73e-01 | 100.0% | 45.0% |
| 3dupA02 | 3.30.750.160 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.57 | 48.0 | 4.21e-01 | 100.0% | 93.4% |
| 3n5fA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.57 | 47.0 | 3.21e-01 | 98.5% | 74.7% |
| 1je0C00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.57 | 47.0 | 3.32e-01 | 95.4% | 63.0% |
| 4evqA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 38.0 | 2.72e-01 | 70.8% | 82.2% |
| 1q1gA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.56 | 48.0 | 3.28e-01 | 98.5% | 94.2% |
| 3u40D00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.55 | 45.0 | 3.15e-01 | 95.4% | 61.4% |
| 5mx4A00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.54 | 45.0 | 3.16e-01 | 95.4% | 63.1% |
| 1llnA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.53 | 40.0 | 2.99e-01 | 83.1% | 88.0% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.08e-01 | 83.1% | 39.7% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 39.0 | 3.51e-01 | 83.1% | 62.1% |
| 6kikA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.52 | 45.0 | 3.02e-01 | 100.0% | 37.1% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 39.0 | 3.29e-01 | 87.7% | 49.2% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.51 | 39.0 | 3.21e-01 | 100.0% | 45.4% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 35.0 | 3.61e-01 | 72.3% | 83.3% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4309637 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.76 | 59.0 | 5.42e-01 | 96.9% | 65.5% |
| 3262307 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.74 | 55.0 | 5.88e-01 | 98.5% | 94.5% |
| 5006888 | 304.22.1.2 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › PF26257 | 0.74 | 56.0 | 5.47e-01 | 95.4% | 74.3% |
| 4323104 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.71 | 57.0 | 5.86e-01 | 95.4% | 95.0% |
| 4422689 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.70 | 58.0 | 5.54e-01 | 95.4% | 78.7% |
| 4965698 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.69 | 54.0 | 5.14e-01 | 95.4% | 71.2% |
| 4632150 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.68 | 58.0 | 5.16e-01 | 95.4% | 66.3% |
| 4246202 | 304.56.1.6 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › UreE_C | 0.68 | 57.0 | 5.05e-01 | 93.8% | 67.4% |
| 4073171 | 304.120.1.11 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › UreE_C | 0.68 | 57.0 | 5.04e-01 | 93.8% | 67.4% |
| 4407103 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.68 | 54.0 | 5.58e-01 | 96.9% | 96.7% |
| 4472698 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.67 | 50.0 | 5.27e-01 | 89.2% | 96.4% |
| 4965231 | 304.24.1.2 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF1949 | 0.67 | 53.0 | 5.22e-01 | 95.4% | 82.9% |
| 4211631 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.67 | 48.0 | 5.18e-01 | 95.4% | 100.0% |
| 3285236 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.67 | 54.0 | 5.58e-01 | 89.2% | 98.3% |
| 3708065 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.66 | 53.0 | 5.13e-01 | 95.4% | 79.5% |
| 4309316 | 3016.1.1.19 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C | 0.66 | 54.0 | 5.22e-01 | 95.4% | 80.0% |
| 3425736 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.66 | 53.0 | 4.77e-01 | 95.4% | 63.2% |
| 4579892 | 3016.1.1.19 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C | 0.65 | 53.0 | 5.43e-01 | 93.8% | 100.0% |
| 4975038 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.65 | 49.0 | 4.92e-01 | 96.9% | 83.1% |
| 3504887 | 3525.1.1.2 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › AHD | 0.64 | 52.0 | 5.41e-01 | 93.8% | 96.7% |
| 4292211 | 3016.1.1.19 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C | 0.64 | 52.0 | 4.69e-01 | 96.9% | 82.0% |
| 5022527 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.64 | 51.0 | 5.21e-01 | 93.8% | 98.3% |
| 3957678 | 205.1.1.20 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_15 | 0.64 | 48.0 | 4.94e-01 | 95.4% | 90.0% |
| 3456656 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.63 | 50.0 | 5.08e-01 | 95.4% | 92.3% |
| 4654999 | 3016.1.1.19 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C | 0.63 | 51.0 | 4.62e-01 | 95.4% | 77.9% |
| 3212403 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.63 | 48.0 | 3.25e-01 | 84.6% | 24.7% |
| 3496221 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.62 | 50.0 | 5.16e-01 | 93.8% | 100.0% |
| 3948578 | 327.16.1.7 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Rhomboid_N | 0.62 | 49.0 | 4.85e-01 | 95.4% | 82.9% |
| 3621974 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.62 | 50.0 | 4.88e-01 | 95.4% | 81.3% |
| 4598960 | 304.36.1.0 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like | 0.62 | 47.0 | 4.66e-01 | 86.2% | 82.9% |
| 5007807 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.61 | 50.0 | 4.53e-01 | 96.9% | 69.5% |
| 4133258 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.61 | 51.0 | 4.68e-01 | 98.5% | 90.0% |
| 3516510 | 304.48.1.6 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A | 0.60 | 50.0 | 4.21e-01 | 96.9% | 81.5% |
| 5001428 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.60 | 50.0 | 4.84e-01 | 98.5% | 96.0% |
| 4336489 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.60 | 49.0 | 4.39e-01 | 100.0% | 79.0% |
| 3826288 | 205.1.1.19 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 | 0.60 | 48.0 | 4.77e-01 | 96.9% | 87.1% |
| 4928672 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.59 | 49.0 | 4.29e-01 | 100.0% | 76.4% |
| 4886138 | 7577.1.1.0 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases | 0.59 | 48.0 | 4.47e-01 | 95.4% | 91.8% |
| 3895419 | 221.4.1.24 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, DUF4743 | 0.59 | 49.0 | 3.32e-01 | 100.0% | 64.5% |
| 4614931 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.59 | 47.0 | 4.54e-01 | 93.8% | 97.3% |
| 4275893 | 2011.2.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 | 0.58 | 48.0 | 3.40e-01 | 96.9% | 93.3% |
| 3943336 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.58 | 45.0 | 2.93e-01 | 84.6% | 49.7% |
| 5069565 | 304.26.1.0 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like | 0.58 | 47.0 | 4.30e-01 | 96.9% | 69.5% |
| 3675938 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.58 | 43.0 | 4.05e-01 | 80.0% | 92.5% |
| 5029986 | 3261.1.1.0 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb | 0.58 | 43.0 | 4.55e-01 | 100.0% | 98.2% |
| 3630540 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.57 | 43.0 | 2.96e-01 | 84.6% | 24.9% |
| 3305844 | 4033.1.1.0 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like | 0.57 | 42.0 | 3.33e-01 | 89.2% | 35.9% |
| 3591691 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 44.0 | 4.02e-01 | 95.4% | 94.7% |
| 4966697 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.55 | 44.0 | 4.25e-01 | 96.9% | 92.5% |
| 3509792 | 5069.1.1.3 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_I | 0.54 | 45.0 | 2.87e-01 | 96.9% | 34.2% |
| 3973554 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.54 | 44.0 | 4.11e-01 | 100.0% | 86.4% |
| 4882106 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.54 | 40.0 | 3.61e-01 | 84.6% | 86.9% |
| 5077814 | 2011.2.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 | 0.52 | 46.0 | 3.14e-01 | 100.0% | 94.2% |
| 4018502 | 226.1.1.3 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ | 0.51 | 40.0 | 3.19e-01 | 100.0% | 40.6% |
| 3236490 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.51 | 42.0 | 3.09e-01 | 100.0% | 91.9% |
| 3396991 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 3.38e-01 | 83.1% | 70.0% |
| 3369280 | 2484.1.1.153 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 | 0.50 | 42.0 | 2.63e-01 | 95.4% | 80.0% |
| 4002965 | 524.1.1.0 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p | 0.50 | 44.0 | 3.51e-01 | 98.5% | 64.6% |
| 3721491 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.50 | 41.0 | 3.31e-01 | 100.0% | 49.3% |