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PPR_Contig_984988_prodigal-single.1__X__X__00261

Bact-Vir

PPR_Contig_984988_prodigal-single.1__X__X__00261

Identity

Kingdom:
phage

Quality

50.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-69
PDB
Domain cluster: rep: RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00377__D12-70
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r89A01 1.10.1410.30 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › CCA tRNA nucleotidyltransferase, domain 2 0.56 40.0 3.17e-01 76.7% 78.6%
7xoiP01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 36.0 3.38e-01 93.3% 51.9%
5t8uB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 42.0 2.86e-01 90.0% 46.0%
1ciaA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 40.0 2.89e-01 90.0% 84.5%
1f3hB00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.51 35.0 2.84e-01 73.3% 45.9%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 38.0 3.10e-01 93.3% 93.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078669 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.89 75.0 7.59e-01 100.0% 91.5%
3716713 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.66 47.0 5.08e-01 100.0% 92.0%
5068408 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.62 42.0 4.62e-01 100.0% 95.6%
4138514 7577.1.1.3 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_5 0.56 40.0 2.40e-01 75.0% 98.5%
4950527 2011.1.1.10 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › FGase 0.55 44.0 2.98e-01 93.3% 76.2%
4876714 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.54 42.0 3.06e-01 91.7% 42.2%
5037085 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.44e-01 80.0% 54.4%
3826676 109.4.1.583 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.53 45.0 2.87e-01 100.0% 24.3%
3348024 109.4.1.583 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.53 45.0 3.46e-01 100.0% 55.3%
3368067 109.4.1.583 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.51 42.0 2.75e-01 100.0% 25.5%
4243510 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.51 41.0 2.90e-01 100.0% 52.9%
4678772 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.50 34.0 3.40e-01 91.7% 68.3%
5069246 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.50 34.0 3.56e-01 71.7% 96.0%