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P_protein

Euk-Vir

Almendravirus_arboretum

P_protein__YP_009094379__Almendravirus_arboretum__1972683

Identity

Accession:
YP_009094379 ↗
Protein ID:
P_protein
Kingdom:
euk

Quality

53.0 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Almendravirus› Almendravirus_arboretum

TaxID: 1972683

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 61-176
PDB
D2 high residues 207-278
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.63 47.0 4.68e-01 80.6% 86.7%
1ndbA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.61 49.0 3.28e-01 88.9% 61.8%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 40.0 4.38e-01 80.6% 92.7%
3ce2A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.59 33.0 3.95e-01 98.6% 85.1%
3d3kA00 3.40.50.10260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain 0.58 49.0 3.54e-01 98.6% 94.4%
2j0wA02 1.20.120.1320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain 0.58 43.0 4.01e-01 80.6% 78.5%
2oexA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.57 43.0 3.48e-01 81.9% 77.6%
1c3cA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.55 42.0 4.13e-01 87.5% 75.3%
3ay5A01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.55 40.0 3.35e-01 79.2% 61.7%
5ez1A01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 37.0 3.39e-01 79.2% 51.0%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.54 37.0 3.92e-01 80.6% 86.7%
2dkzA01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.54 38.0 4.02e-01 100.0% 88.5%
3f2bA07 6.10.140.1510 Special › Helix non-globular › Helix Hairpins › 0.53 44.0 4.23e-01 95.8% 91.9%
3c8zA02 1.20.120.640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.53 36.0 3.54e-01 73.6% 69.9%
3f4sA02 1.10.40.80 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.51 40.0 4.25e-01 86.1% 96.9%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3252087 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.65 49.0 5.08e-01 80.6% 95.4%
3558099 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.63 48.0 4.70e-01 81.9% 90.0%
3889216 509.1.1.3 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › USH1C_N 0.63 47.0 4.73e-01 80.6% 98.7%
5066226 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.63 47.0 4.91e-01 80.6% 89.2%
3427839 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.60 46.0 4.48e-01 87.5% 98.8%
3740688 7076.1.1.0 ↗ 0.58 44.0 4.37e-01 81.9% 81.3%
4987113 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.56 43.0 4.27e-01 86.1% 98.7%
5001059 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.56 43.0 4.23e-01 87.5% 97.5%
4945368 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.56 42.0 4.14e-01 84.7% 96.2%
4946727 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.55 42.0 4.17e-01 86.1% 98.8%
4989754 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.55 42.0 4.12e-01 87.5% 97.5%
4987957 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.54 40.0 4.02e-01 100.0% 77.3%
4954173 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.54 41.0 4.11e-01 86.1% 100.0%
5058165 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.54 42.0 4.05e-01 88.9% 95.3%
3991497 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 41.0 4.39e-01 100.0% 100.0%
5060017 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.54 41.0 4.27e-01 86.1% 96.9%
4942297 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.53 37.0 3.83e-01 76.4% 81.4%
3239394 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.53 36.0 3.67e-01 70.8% 81.4%
4957877 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 36.0 3.64e-01 100.0% 72.9%
5017312 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.53 40.0 3.98e-01 87.5% 98.8%
4952067 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.52 37.0 3.80e-01 76.4% 87.7%
5042563 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.52 41.0 3.98e-01 91.7% 98.8%
4952141 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.52 40.0 3.90e-01 87.5% 95.0%
4941277 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.52 39.0 3.85e-01 86.1% 97.5%
4507907 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.52 39.0 3.83e-01 87.5% 96.5%
4956905 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.52 39.0 3.85e-01 86.1% 96.2%
5057092 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.52 36.0 3.69e-01 76.4% 81.4%
4948420 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.51 39.0 3.84e-01 87.5% 98.8%
4056578 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.51 37.0 3.36e-01 80.6% 78.2%
4114810 4049.1.1.1 ↗ alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › CysG_dimeriser 0.51 38.0 4.13e-01 79.2% 96.7%
4307412 181.1.1.27 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › ATP-cone 0.50 39.0 3.80e-01 90.3% 96.5%
4681348 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.50 38.0 3.57e-01 87.5% 95.0%
5074671 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.50 39.0 3.83e-01 93.1% 98.8%
4961006 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.50 38.0 3.78e-01 86.1% 100.0%