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P_protein
Euk-VirTomato_yellow_mottle-associated_virus
P_protein__YP_009352241__Tomato_yellow_mottle-associated_virus__1967841
Identity
- Accession:
- YP_009352241 ↗
- Protein ID:
- P_protein
- Kingdom:
- euk
Quality
68.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 282-342
Domain cluster:
rep: putative_P_protein__YP_010087625__Cytorhabdovirus_fragariae__2676436__D294-354
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t4rA00 | 1.20.120.1590 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.92 | 85.0 | 7.97e-01 | 100.0% | 83.3% |
| 4bzaA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.70 | 52.0 | 5.06e-01 | 96.7% | 72.1% |
| 3gruA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.67 | 53.0 | 4.72e-01 | 85.2% | 87.2% |
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.65 | 41.0 | 3.53e-01 | 72.1% | 39.0% |
| 7vkcA01 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.65 | 44.0 | 3.23e-01 | 70.5% | 77.0% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.63 | 44.0 | 4.17e-01 | 73.8% | 93.2% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.62 | 51.0 | 4.64e-01 | 90.2% | 90.0% |
| 2ex3B02 | 1.20.1270.230 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain | 0.61 | 53.0 | 4.90e-01 | 100.0% | 79.0% |
| 3idwA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.60 | 41.0 | 4.09e-01 | 98.4% | 66.7% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.58 | 48.0 | 3.97e-01 | 91.8% | 66.4% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 49.0 | 4.44e-01 | 96.7% | 77.4% |
| 4nqwA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.57 | 49.0 | 4.46e-01 | 96.7% | 77.4% |
| 1g71A02 | 1.10.8.160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA primase S; domain 2 | 0.56 | 46.0 | 3.83e-01 | 90.2% | 86.1% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 45.0 | 4.36e-01 | 91.8% | 85.3% |
| 7jv7B01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 44.0 | 3.49e-01 | 100.0% | 41.1% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 44.0 | 3.92e-01 | 100.0% | 92.8% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 46.0 | 3.67e-01 | 98.4% | 75.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185545 | 3571.1.1.1 ↗ | alpha arrays › Lettuce necrotic yellow virus phosphoprotein C-terminal domain › Lettuce necrotic yellow virus phosphoprotein C-terminal domain › Lettuce necrotic yellow virus phosphoprotein C-terminal domain › LNYV_PP_C | 0.92 | 85.0 | 7.97e-01 | 100.0% | 83.3% |
| 3926645 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.62 | 51.0 | 4.59e-01 | 91.8% | 83.5% |
| 4203087 | 601.7.1.48 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › PF29375 | 0.59 | 47.0 | 3.89e-01 | 88.5% | 74.8% |
| 4038157 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.58 | 43.0 | 4.66e-01 | 98.4% | 100.0% |
| 4180990 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.57 | 41.0 | 3.83e-01 | 91.8% | 60.0% |
| 3250201 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.55 | 38.0 | 3.76e-01 | 80.3% | 69.2% |
| 4953164 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.55 | 40.0 | 4.10e-01 | 90.2% | 89.1% |
| 4981898 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.54 | 39.0 | 3.72e-01 | 77.0% | 77.3% |
| 4952657 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.54 | 37.0 | 3.75e-01 | 98.4% | 73.3% |
| 3746144 | 192.29.1.273 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › NICE-3 | 0.54 | 41.0 | 4.08e-01 | 85.2% | 93.8% |
| 3286211 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.52 | 43.0 | 4.34e-01 | 91.8% | 95.0% |
| 3989606 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.51 | 41.0 | 4.04e-01 | 98.4% | 97.1% |
| 4096686 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.50 | 39.0 | 3.63e-01 | 93.4% | 80.0% |
D2
medium
residues 73-220
Domain cluster:
rep: P_protein__YP_002308372__Lettuce_yellow_mottle_virus__471285__D60-175