←Back to structures

P_protein

Euk-Vir

Mount_Mabu_Lophuromys_virus_1

P_protein__YP_009666841__Mount_Mabu_Lophuromys_virus_1__2116559

Identity

Accession:
YP_009666841 ↗
Protein ID:
P_protein
Kingdom:
euk

Quality

53.9 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Jeilongvirus› Mount_Mabu_Lophuromys_virus_1

TaxID: 2116559

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 424-487
PDB
Domain cluster: rep: P_phosphoprotein__NP_112022__Nipah_henipavirus__121791__D646-706
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03210.20 best Paramyx_P_V_C 50.8 3.30e-13 89.1% 34.3%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.84 66.0 7.07e-01 84.4% 96.4%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.81 61.0 6.60e-01 82.8% 96.2%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.80 57.0 6.43e-01 79.7% 100.0%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.75 58.0 6.10e-01 84.4% 96.4%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.74 58.0 3.95e-01 85.9% 29.2%
3dfzA02 1.10.8.610 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › SirC, precorrin-2 dehydrogenase, C-terminal helical domain-like 0.74 54.0 5.19e-01 78.1% 71.6%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.71 54.0 5.64e-01 82.8% 100.0%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.71 50.0 3.87e-01 73.4% 74.1%
1vq8P03 1.10.1200.60 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.71 54.0 5.79e-01 84.4% 94.5%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.70 58.0 4.46e-01 95.3% 59.2%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.68 52.0 5.10e-01 85.9% 88.9%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.68 52.0 4.86e-01 85.9% 82.1%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.67 51.0 4.89e-01 82.8% 85.5%
1lj2A00 1.20.5.970 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein 0.66 51.0 4.42e-01 85.9% 55.7%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.65 53.0 4.82e-01 92.2% 75.3%
6vw7B03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.65 47.0 4.34e-01 78.1% 70.2%
2kpqA01 6.10.250.730 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 52.0 5.02e-01 100.0% 93.2%
2iylD01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.60 46.0 4.66e-01 93.8% 87.7%
2zt5A02 3.30.40.230 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.59 45.0 4.26e-01 89.1% 70.2%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.59 45.0 4.25e-01 87.5% 87.7%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.58 42.0 4.54e-01 78.1% 94.4%
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.58 39.0 3.91e-01 85.9% 68.2%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.56 45.0 4.05e-01 90.6% 77.9%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.56 44.0 3.83e-01 95.3% 87.1%
3wa8B00 1.10.520.40 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 0.55 46.0 3.48e-01 100.0% 71.4%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.55 42.0 3.59e-01 84.4% 84.0%
2hlsA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 45.0 3.77e-01 100.0% 97.5%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4678110 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.83 65.0 6.03e-01 84.4% 67.5%
4779202 632.3.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.82 61.0 6.71e-01 79.7% 100.0%
3598 632.3.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › Paramyxo_P 0.81 61.0 6.60e-01 82.8% 96.2%
5064035 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.77 57.0 5.88e-01 79.7% 100.0%
4031187 632.19.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.76 60.0 5.70e-01 85.9% 97.3%
4153338 101.1.2.567 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF222 0.76 56.0 4.28e-01 81.2% 35.5%
4946843 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.75 58.0 5.81e-01 84.4% 98.5%
3517647 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.74 58.0 5.20e-01 85.9% 88.9%
3486407 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.74 50.0 4.34e-01 70.3% 80.0%
3988174 632.19.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.73 58.0 5.30e-01 85.9% 88.2%
5066642 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.73 57.0 5.57e-01 87.5% 94.3%
3587779 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.72 63.0 5.90e-01 98.4% 98.8%
3578718 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.70 51.0 4.43e-01 76.6% 75.8%
3895592 601.14.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.70 58.0 4.44e-01 95.3% 58.1%
4968425 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.70 55.0 5.39e-01 87.5% 94.3%
3631473 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.70 58.0 5.45e-01 87.5% 92.0%
5078120 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.69 54.0 5.34e-01 87.5% 98.6%
3927489 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.69 57.0 5.47e-01 93.8% 92.0%
5020892 632.3.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.67 55.0 5.52e-01 89.1% 96.9%
4070925 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.67 51.0 4.83e-01 85.9% 86.3%
5021020 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.65 53.0 4.74e-01 89.1% 71.1%
3996657 4979.2.1.1 ↗ alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD 0.63 46.0 5.01e-01 79.7% 98.0%
3473137 604.9.1.2 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Strabismus 0.61 49.0 4.32e-01 92.2% 89.0%
4044098 3352.1.1.1 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 0.58 49.0 2.99e-01 98.4% 73.1%
3643932 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 40.0 3.79e-01 78.1% 65.9%
3928200 193.1.1.36 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › PF28958 0.57 49.0 3.92e-01 100.0% 74.1%
None — 0.50 41.0 2.63e-01 93.8% 56.2%