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Papain-like_cysteine_peptidase
Euk-VirPandoravirus_macleodensis
Papain-like_cysteine_peptidase__YP_009481341__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481341 ↗
- Protein ID:
- Papain-like_cysteine_peptidase
- Kingdom:
- euk
Quality
47.7
mean pLDDT
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 258-288_317-424_447-478
Domain cluster:
rep: Peptidase_domain_containing_protein__YP_009430017__Pandoravirus_salinus__1349410__D215-250_298-409
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00112.30 best | Peptidase_C1 | 20.9 | 4.80e-04 | 88.9% | 16.4% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fpwA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 54.0 | 4.39e-01 | 100.0% | 84.9% |
| 3oisB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 53.0 | 4.48e-01 | 100.0% | 94.0% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 26.0 | 3.42e-01 | 93.0% | 89.2% |
| 5cqgA03 | 1.10.10.2210 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 24.0 | 3.30e-01 | 87.7% | 88.6% |
| 1deuB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 49.0 | 4.19e-01 | 100.0% | 93.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3250297 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.60 | 55.0 | 4.58e-01 | 96.5% | 87.1% |
| 3723538 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 54.0 | 4.37e-01 | 100.0% | 63.9% |
| 3564430 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.56 | 53.0 | 4.22e-01 | 99.4% | 85.9% |
| 4448672 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.56 | 53.0 | 4.25e-01 | 100.0% | 78.9% |
| 3617140 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.55 | 52.0 | 4.18e-01 | 100.0% | 78.4% |
| None | — | 0.55 | 52.0 | 4.04e-01 | 100.0% | 72.6% | |
| 5016484 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.54 | 51.0 | 4.09e-01 | 100.0% | 81.9% |
| 3906939 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.53 | 50.0 | 4.04e-01 | 100.0% | 80.0% |
| 4978305 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.52 | 49.0 | 3.98e-01 | 100.0% | 86.4% |
| 3510485 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.51 | 49.0 | 3.85e-01 | 100.0% | 80.0% |
| 3520437 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.50 | 26.0 | 2.52e-01 | 80.7% | 44.2% |
D2
medium
residues 289-316_479-613_648-681
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00112.30 best | Peptidase_C1 | 70.9 | 2.40e-19 | 55.3% | 44.1% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fpwA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.82 | 58.0 | 4.91e-01 | 71.1% | 79.8% |
| 1xkgA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.80 | 57.0 | 4.82e-01 | 72.1% | 73.8% |
| 1deuB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.79 | 56.0 | 4.96e-01 | 71.1% | 94.6% |
| 3oisB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.76 | 54.0 | 4.78e-01 | 71.6% | 89.5% |
| 3pnrA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.76 | 53.0 | 4.94e-01 | 71.1% | 95.0% |
| 3iutA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.74 | 52.0 | 5.06e-01 | 71.1% | 100.0% |
| 1act000 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.74 | 52.0 | 5.06e-01 | 72.1% | 100.0% |
| 1jqpA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.69 | 55.0 | 5.23e-01 | 81.7% | 100.0% |
| 2wbfX00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.68 | 56.0 | 4.97e-01 | 83.8% | 99.6% |
| 5egwA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.66 | 56.0 | 4.42e-01 | 86.8% | 62.0% |
| 3pw3D00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.65 | 48.0 | 3.87e-01 | 75.1% | 98.6% |
| 1gcbA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 48.0 | 3.69e-01 | 76.1% | 95.5% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.62 | 47.0 | 3.66e-01 | 76.6% | 96.4% |
| 4mi7A00 | 3.90.70.170 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.54 | 30.0 | 3.83e-01 | 78.7% | 89.5% |
ECOD (64)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3261680 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.86 | 60.0 | 5.16e-01 | 71.1% | 79.6% |
| 3244679 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.86 | 59.0 | 4.61e-01 | 70.1% | 76.5% |
| 3250297 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.85 | 60.0 | 5.21e-01 | 72.1% | 85.4% |
| 3395889 | 219.1.1.2 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1,Propeptide_C1 | 0.85 | 59.0 | 4.87e-01 | 71.1% | 80.6% |
| 3479869 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.85 | 60.0 | 4.91e-01 | 72.1% | 80.6% |
| 4377695 | 219.1.1.2 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1,Propeptide_C1 | 0.84 | 58.0 | 4.81e-01 | 70.1% | 80.6% |
| 3242975 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.84 | 60.0 | 4.80e-01 | 72.1% | 74.4% |
| 4000671 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.83 | 57.0 | 5.11e-01 | 70.1% | 80.0% |
| 3497089 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.83 | 58.0 | 4.87e-01 | 71.1% | 79.0% |
| 3486878 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.83 | 58.0 | 4.81e-01 | 71.1% | 76.8% |
| 2793930 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.83 | 59.0 | 4.89e-01 | 72.1% | 81.5% |
| 3514380 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.82 | 58.0 | 4.87e-01 | 71.6% | 80.3% |
| 3906939 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.82 | 58.0 | 4.90e-01 | 72.1% | 77.4% |
| 3514367 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.82 | 57.0 | 5.00e-01 | 71.1% | 88.4% |
| 3481577 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.80 | 56.0 | 5.15e-01 | 70.6% | 91.7% |
| 3891882 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.80 | 56.0 | 4.81e-01 | 71.1% | 86.7% |
| 3795430 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.79 | 55.0 | 5.04e-01 | 70.1% | 88.1% |
| 3993778 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.79 | 55.0 | 5.02e-01 | 70.1% | 80.0% |
| 3674165 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.79 | 55.0 | 4.83e-01 | 70.1% | 85.6% |
| 3776905 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.79 | 57.0 | 5.07e-01 | 72.6% | 91.5% |
| 3470973 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.79 | 55.0 | 5.02e-01 | 70.1% | 89.8% |
| 4974486 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.79 | 57.0 | 4.84e-01 | 72.6% | 81.0% |
| 3391656 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.79 | 55.0 | 4.63e-01 | 71.1% | 74.8% |
| 3488949 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.79 | 54.0 | 5.07e-01 | 70.1% | 91.9% |
| None | — | 0.79 | 54.0 | 4.56e-01 | 70.1% | 71.5% | |
| 3745990 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.79 | 54.0 | 5.05e-01 | 70.1% | 94.5% |
| 4053732 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.79 | 54.0 | 4.52e-01 | 70.1% | 69.4% |
| 3865831 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.78 | 56.0 | 4.61e-01 | 72.6% | 73.8% |
| 3273778 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.78 | 54.0 | 4.45e-01 | 70.1% | 71.3% |
| 3791026 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.78 | 56.0 | 4.59e-01 | 72.1% | 72.2% |
| 3798944 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.78 | 55.0 | 4.97e-01 | 70.6% | 90.8% |
| 4026925 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.78 | 55.0 | 4.66e-01 | 72.1% | 93.2% |
| 3421122 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.78 | 56.0 | 5.06e-01 | 72.6% | 91.6% |
| 4448672 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.78 | 54.0 | 4.52e-01 | 70.1% | 72.7% |
| 3807595 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.77 | 53.0 | 4.31e-01 | 70.1% | 65.0% |
| 3705335 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.77 | 56.0 | 5.01e-01 | 73.6% | 92.3% |
| 3248099 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.77 | 53.0 | 4.37e-01 | 70.1% | 70.7% |
| 3884055 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.77 | 55.0 | 5.03e-01 | 72.6% | 87.5% |
| 3443485 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.77 | 55.0 | 4.38e-01 | 72.6% | 68.3% |
| 4391291 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.77 | 55.0 | 5.06e-01 | 72.1% | 93.8% |
| 4127832 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.77 | 55.0 | 4.62e-01 | 72.1% | 75.0% |
| 3668220 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.77 | 53.0 | 4.52e-01 | 70.1% | 75.5% |
| None | — | 0.76 | 54.0 | 4.44e-01 | 72.6% | 69.4% | |
| 3836765 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.76 | 53.0 | 4.92e-01 | 70.1% | 90.6% |
| 3998812 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.75 | 63.0 | 5.07e-01 | 86.3% | 78.8% |
| 3699843 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.74 | 55.0 | 4.64e-01 | 76.1% | 73.2% |
| 4059449 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.74 | 53.0 | 4.71e-01 | 72.6% | 83.5% |
| 5032667 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.73 | 59.0 | 4.88e-01 | 83.2% | 80.0% |
| 5064725 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.72 | 53.0 | 4.52e-01 | 74.1% | 78.8% |
| 3229331 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.71 | 58.0 | 5.31e-01 | 82.7% | 92.6% |
| 4663619 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.71 | 58.0 | 4.75e-01 | 83.8% | 84.3% |
| 3216614 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.70 | 57.0 | 4.67e-01 | 83.2% | 76.9% |
| 4030613 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.69 | 56.0 | 4.95e-01 | 82.2% | 98.1% |
| 3317119 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.69 | 56.0 | 5.12e-01 | 83.8% | 92.0% |
| 4415790 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.69 | 56.0 | 4.85e-01 | 83.8% | 98.6% |
| 4029993 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.68 | 56.0 | 4.26e-01 | 84.3% | 71.6% |
| 3433434 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.67 | 51.0 | 4.98e-01 | 78.2% | 97.2% |
| None | — | 0.67 | 55.0 | 4.42e-01 | 83.8% | 67.9% | |
| 4268173 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.66 | 56.0 | 4.40e-01 | 86.8% | 61.6% |
| 3354341 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.64 | 45.0 | 4.21e-01 | 72.1% | 79.6% |
| 3331216 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.62 | 43.0 | 4.99e-01 | 75.1% | 94.0% |
| 3710887 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.57 | 47.0 | 4.68e-01 | 84.3% | 95.1% |
| 4123449 | 4.8.1.35 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 | 0.56 | 23.0 | 3.44e-01 | 74.6% | 88.2% |
| 3717955 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.53 | 39.0 | 3.22e-01 | 75.6% | 81.4% |