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Papain-like_cysteine_peptidase
Euk-VirPandoravirus_neocaledonia
Papain-like_cysteine_peptidase__YP_009482263__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009482263 ↗
- Protein ID:
- Papain-like_cysteine_peptidase
- Kingdom:
- euk
Quality
46.6
mean pLDDT
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 286-320_348-383_409-454
Domain cluster:
rep: Peptidase_domain_containing_protein__YP_009430017__Pandoravirus_salinus__1349410__D215-250_298-409
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00112.30 best | Peptidase_C1 | 23.9 | 5.70e-05 | 72.7% | 30.9% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jqpA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.74 | 48.0 | 3.77e-01 | 97.4% | 33.8% |
| 3oisB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.68 | 62.0 | 4.66e-01 | 98.3% | 50.9% |
| 3pw3D00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 47.0 | 3.29e-01 | 97.4% | 38.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4770613 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.75 | 48.0 | 4.28e-01 | 97.4% | 47.2% |
| 3479869 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.71 | 67.0 | 4.74e-01 | 100.0% | 51.2% |
| 1165617 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.67 | 62.0 | 6.01e-01 | 98.3% | 95.3% |
| 3584686 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.65 | 57.0 | 4.31e-01 | 94.9% | 61.1% |
| 3906939 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.60 | 56.0 | 4.05e-01 | 100.0% | 44.6% |
| 4026925 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.60 | 53.0 | 3.83e-01 | 94.9% | 48.4% |
| 3751029 | 3720.1.1.1 ↗ | alpha bundles › Receptor activity-modifying protein (RAMP) › Receptor activity-modifying protein (RAMP) › Receptor activity-modifying protein (RAMP) › RAMP | 0.60 | 24.0 | 2.80e-01 | 97.4% | 48.9% |
| 3778061 | 7022.1.1.1 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT | 0.54 | 29.0 | 2.43e-01 | 88.9% | 29.0% |
D2
medium
residues 321-347_509-612
Domain cluster:
rep: papain-like_cysteine_peptidase__YP_004347255__Lausannevirus__999883__D243-364
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00112.30 best | Peptidase_C1 | 71.2 | 1.90e-19 | 79.4% | 41.8% |
D3
medium
residues 613-677
Domain cluster:
representative