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Papain-like_cysteine_peptidase

Euk-Vir

Pandoravirus_quercus

Papain-like_cysteine_peptidase__YP_009483117__Pandoravirus_quercus__2107709

Identity

Accession:: YP_009483117 ↗
Protein ID:: Papain-like_cysteine_peptidase
Kingdom:: euk

Quality

40.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 290-432

PDB

D2 medium residues 433-485_504-545

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00112.30 best	Peptidase_C1	27.3	5.00e-06	91.6%	30.4%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3m9qA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.69	43.0	4.81e-01	97.9%	81.9%
4lduA03	2.30.30.1040	Mainly Beta › Roll › SH3 type barrels. ›	0.63	40.0	4.63e-01	96.8%	91.2%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3557121	4.8.1.1 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo	0.68	41.0	4.70e-01	95.8%	82.9%
5041097	6043.1.1.0 ↗	a+b two layers › yfeY-like › yfeY-like › yfeY-like	0.65	36.0	4.61e-01	89.5%	94.5%
3258657	4.8.1.1 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo	0.64	40.0	4.56e-01	95.8%	85.7%
3938484	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.61	39.0	3.63e-01	100.0%	50.8%
3707121	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.59	38.0	4.21e-01	94.7%	84.0%
1678532	243.3.1.3 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY	0.58	33.0	3.65e-01	92.6%	72.9%
4952318	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.57	31.0	3.61e-01	86.3%	75.4%
3197575	2.1.1.1 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23	0.55	39.0	4.02e-01	93.7%	76.7%
4992338	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.55	40.0	3.88e-01	91.6%	68.6%
3508573	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.54	41.0	3.98e-01	80.0%	85.7%
3267804	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.54	45.0	4.42e-01	100.0%	85.0%
5014254	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.52	28.0	3.39e-01	89.5%	80.0%
3596609	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.52	47.0	3.27e-01	100.0%	35.8%
5031909	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.52	38.0	3.62e-01	92.6%	64.4%
5073196	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.52	38.0	3.53e-01	92.6%	61.0%