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Patatin-like_phospholipase
Euk-VirPandoravirus_quercus
Patatin-like_phospholipase__YP_009483003__Pandoravirus_quercus__2107709
Identity
- Accession:
- YP_009483003 ↗
- Protein ID:
- Patatin-like_phospholipase
- Kingdom:
- euk
Quality
61.0
mean pLDDT
Cluster
View cluster (49 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 62-138_185-198_259-276_313-358
Domain cluster:
rep: hypothetical_protein_AP054_gp149__YP_009173161__Ostreococcus_lucimarinus_virus_7__1663209__D1-61_101-112_168-253
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01734.28 best | Patatin | 29.2 | 1.40e-06 | 89.0% | 46.6% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gqaD01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 40.0 | 4.27e-01 | 92.9% | 77.8% |
| 2amlA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.58 | 40.0 | 4.17e-01 | 98.7% | 74.8% |
| 3lncA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 35.0 | 3.78e-01 | 94.8% | 70.3% |
| 3mw8A02 | 3.40.50.10090 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 40.0 | 4.49e-01 | 96.1% | 93.3% |
| 3hbaA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.57 | 34.0 | 3.87e-01 | 98.7% | 78.3% |
| 1jqkA02 | 3.40.50.2030 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 41.0 | 4.01e-01 | 94.2% | 71.6% |
| 4h2dA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.55 | 36.0 | 3.62e-01 | 96.8% | 64.6% |
| 3tbfA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.53 | 39.0 | 3.97e-01 | 98.7% | 78.5% |
| 1ihuA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 46.0 | 3.73e-01 | 99.4% | 84.8% |
| 2hf9B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 43.0 | 3.95e-01 | 97.4% | 69.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4029194 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.77 | 70.0 | 5.20e-01 | 95.5% | 87.0% |
| 3276426 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.75 | 68.0 | 5.26e-01 | 95.5% | 85.1% |
| 3940386 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.71 | 65.0 | 4.78e-01 | 95.5% | 88.6% |
| 3503525 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.70 | 63.0 | 4.85e-01 | 94.8% | 88.7% |
| 4888162 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.70 | 63.0 | 5.26e-01 | 95.5% | 98.4% |
| 3479738 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 47.0 | 3.15e-01 | 92.3% | 31.7% |
| 3547810 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.54 | 50.0 | 4.06e-01 | 98.1% | 82.1% |
| 3608426 | 7562.1.1.0 ↗ | a/b three-layered sandwiches › Thiamin pyrophosphokinase, catalytic domain › Thiamin pyrophosphokinase, catalytic domain › Thiamin pyrophosphokinase, catalytic domain | 0.53 | 46.0 | 3.81e-01 | 94.8% | 93.9% |
| 3714746 | 7562.1.1.1 ↗ | a/b three-layered sandwiches › Thiamin pyrophosphokinase, catalytic domain › Thiamin pyrophosphokinase, catalytic domain › Thiamin pyrophosphokinase, catalytic domain › TPK_catalytic | 0.51 | 44.0 | 3.95e-01 | 93.5% | 96.3% |
| 3952965 | 2002.1.1.67 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh | 0.51 | 41.0 | 3.27e-01 | 86.5% | 79.7% |
| 4946102 | 7514.1.1.8 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › DHODB_Fe-S_bind | 0.50 | 42.0 | 4.33e-01 | 96.1% | 92.7% |
D2
medium
residues 139-184_199-258
Domain cluster:
rep: hypothetical_protein_AP054_gp149__YP_009173161__Ostreococcus_lucimarinus_virus_7__1663209__D62-100_113-167
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01734.28 best | Patatin | 35.9 | 1.20e-08 | 99.1% | 57.1% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4akfA01 | 3.40.1090.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain | 0.77 | 72.0 | 4.91e-01 | 100.0% | 59.3% |
| 2xigA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.65 | 23.0 | 3.15e-01 | 76.4% | 60.0% |
| 3tu3B02 | 3.40.1090.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain | 0.56 | 51.0 | 3.78e-01 | 100.0% | 55.1% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3958113 | 2007.1.19.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like | 0.83 | 78.0 | 5.47e-01 | 100.0% | 45.2% |
| 3950744 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.83 | 77.0 | 5.38e-01 | 100.0% | 43.8% |
| 4013938 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.81 | 75.0 | 5.08e-01 | 100.0% | 35.8% |
| 3736348 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.81 | 75.0 | 4.98e-01 | 100.0% | 41.3% |
| 3960688 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.79 | 74.0 | 5.88e-01 | 100.0% | 55.0% |
| 3955547 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.79 | 72.0 | 5.16e-01 | 100.0% | 36.8% |
| 3954659 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.79 | 71.0 | 5.21e-01 | 100.0% | 39.2% |
| 3688621 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.78 | 73.0 | 4.77e-01 | 100.0% | 33.0% |
| 4383962 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.78 | 74.0 | 4.98e-01 | 100.0% | 31.0% |
| 4029038 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.78 | 72.0 | 4.94e-01 | 100.0% | 39.7% |
| 4013572 | 2007.1.19.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like | 0.78 | 74.0 | 5.13e-01 | 100.0% | 35.1% |
| 3974107 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.78 | 72.0 | 4.92e-01 | 100.0% | 41.1% |
| 4610803 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.78 | 72.0 | 4.86e-01 | 100.0% | 35.6% |
| 4225196 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.78 | 73.0 | 5.12e-01 | 100.0% | 35.7% |
| 3262771 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.77 | 72.0 | 5.13e-01 | 100.0% | 56.2% |
| 3250361 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.77 | 72.0 | 4.99e-01 | 100.0% | 40.3% |
| 1380481 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.77 | 72.0 | 4.70e-01 | 100.0% | 49.3% |
| 3815904 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.77 | 71.0 | 4.60e-01 | 100.0% | 41.8% |
| 3964428 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.77 | 69.0 | 5.09e-01 | 100.0% | 39.6% |
| 4410196 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.77 | 71.0 | 4.74e-01 | 100.0% | 33.4% |
| 4007500 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.77 | 70.0 | 5.07e-01 | 100.0% | 38.8% |
| 3738625 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.77 | 72.0 | 5.04e-01 | 100.0% | 44.6% |
| 3952743 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.77 | 69.0 | 4.98e-01 | 100.0% | 37.4% |
| 4040588 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.77 | 70.0 | 4.85e-01 | 100.0% | 38.2% |
| 3736375 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.76 | 70.0 | 4.70e-01 | 100.0% | 36.9% |
| 3272277 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.76 | 71.0 | 4.93e-01 | 100.0% | 35.9% |
| 3175187 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.76 | 70.0 | 4.72e-01 | 100.0% | 37.6% |
| 3371352 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.76 | 69.0 | 4.73e-01 | 100.0% | 44.2% |
| 3589070 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.75 | 70.0 | 5.15e-01 | 100.0% | 49.6% |
| 3284433 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.75 | 71.0 | 4.93e-01 | 100.0% | 45.2% |
| 4973455 | 2007.1.19.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like | 0.75 | 70.0 | 4.85e-01 | 100.0% | 57.8% |
| 5062031 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.75 | 69.0 | 5.08e-01 | 100.0% | 40.4% |
| 3276426 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.74 | 69.0 | 4.82e-01 | 100.0% | 41.0% |
| 3272401 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.74 | 68.0 | 4.64e-01 | 100.0% | 42.8% |
| 3237917 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.73 | 68.0 | 4.68e-01 | 100.0% | 36.8% |
| 3953167 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.73 | 67.0 | 4.84e-01 | 100.0% | 45.3% |
| 3966576 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.72 | 67.0 | 4.89e-01 | 100.0% | 41.9% |
| 3322608 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.71 | 67.0 | 4.85e-01 | 100.0% | 60.4% |
| 5071697 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.70 | 65.0 | 4.63e-01 | 100.0% | 47.1% |
| 4096474 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.51 | 25.0 | 3.25e-01 | 77.4% | 92.0% |
| 4645555 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.51 | 25.0 | 3.24e-01 | 77.4% | 92.0% |