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Peptidase_domain_containing_protein
Euk-VirPandoravirus_salinus
Peptidase_domain_containing_protein__YP_008438079__Pandoravirus_salinus__1349410
Identity
- Accession:
- YP_008438079 ↗
- Protein ID:
- Peptidase_domain_containing_protein
- Kingdom:
- euk
Quality
48.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 321-348_379-536_653-726
Domain cluster:
rep: papain_cysteine_peptidase__YP_009506973__Tunisvirus_fontaine2__1421067__D22-54_72-229_317-392
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00112.30 best | Peptidase_C1 | 29.4 | 1.20e-06 | 25.8% | 17.7% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6zq3A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.82 | 33.0 | 3.78e-01 | 70.4% | 49.0% |
| 5fpwA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.67 | 43.0 | 4.16e-01 | 71.5% | 58.2% |
| 1deuB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.61 | 39.0 | 3.95e-01 | 76.2% | 64.0% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3676121 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.83 | 33.0 | 3.69e-01 | 70.4% | 46.5% |
| 4770613 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.77 | 35.0 | 4.56e-01 | 97.7% | 73.3% |
| 5034502 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.74 | 34.0 | 3.68e-01 | 75.0% | 51.1% |
| 3234755 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.69 | 38.0 | 4.02e-01 | 70.4% | 60.9% |
| 3299435 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.68 | 41.0 | 3.84e-01 | 71.5% | 50.3% |
| 3668220 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.66 | 40.0 | 3.80e-01 | 71.5% | 52.7% |
| 3617140 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.66 | 41.0 | 3.83e-01 | 71.5% | 51.9% |
| 4377695 | 219.1.1.2 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1,Propeptide_C1 | 0.64 | 45.0 | 4.20e-01 | 71.5% | 62.2% |
| 3798944 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.64 | 39.0 | 4.03e-01 | 75.0% | 63.6% |
| 4053732 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.64 | 40.0 | 3.73e-01 | 76.2% | 52.2% |
| 3395889 | 219.1.1.2 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1,Propeptide_C1 | 0.63 | 44.0 | 4.10e-01 | 71.5% | 62.2% |
| 4448672 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.63 | 41.0 | 3.88e-01 | 76.2% | 55.8% |
| 3510485 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.62 | 43.0 | 3.97e-01 | 70.8% | 56.0% |
| 4024702 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.62 | 38.0 | 3.89e-01 | 73.1% | 62.4% |
| 4024199 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.62 | 41.0 | 3.73e-01 | 76.2% | 53.1% |
| 3489030 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.62 | 43.0 | 4.07e-01 | 71.5% | 61.3% |
| 3699969 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.59 | 37.0 | 3.66e-01 | 74.2% | 59.3% |
| 4505160 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.59 | 38.0 | 3.70e-01 | 73.1% | 59.9% |
| 3891882 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.59 | 41.0 | 3.99e-01 | 76.2% | 64.6% |
| 3261680 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.58 | 44.0 | 4.20e-01 | 76.2% | 68.5% |
| 3479869 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 47.0 | 4.36e-01 | 84.2% | 91.4% |
| 3519107 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.55 | 46.0 | 4.16e-01 | 98.8% | 65.7% |
| 3497089 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.55 | 38.0 | 3.63e-01 | 76.2% | 60.3% |
| 3514367 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.54 | 36.0 | 3.60e-01 | 74.6% | 64.0% |
| 3998812 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.53 | 50.0 | 4.48e-01 | 97.7% | 98.2% |
| 3516722 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.51 | 46.0 | 3.36e-01 | 92.3% | 50.9% |
| 3242975 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.50 | 46.0 | 4.14e-01 | 94.2% | 85.3% |
D2
medium
residues 349-378_537-652
Domain cluster:
rep: uncharacterized_peptidase_C1-like_protein__YP_003986985__Acanthamoeba_polyphaga_mimivirus__212035__D36-61_173-280
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00112.30 best | Peptidase_C1 | 75.4 | 1.00e-20 | 79.5% | 44.1% |