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Phosphohydrolase

Euk-Vir

Pandoravirus_dulcis

Phosphohydrolase__YP_008318586__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008318586 ↗
Protein ID:
Phosphohydrolase
Kingdom:
euk

Quality

81.9 mean pLDDT

Cluster

View cluster (7 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 89-149_234-307_369-388
PDB
Domain cluster: rep: FN667788.1__CBJ93864.1__CPT_0055__00055__D7-157
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01966.29 best HD 42.7 9.10e-11 65.2% 58.6%
D2 medium residues 150-189_206-233
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.93 82.0 6.92e-01 92.6% 98.1%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.91 86.0 7.24e-01 100.0% 91.5%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.91 68.0 7.37e-01 77.9% 100.0%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.89 72.0 6.43e-01 85.3% 69.2%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.89 70.0 7.35e-01 82.4% 96.8%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.89 81.0 6.16e-01 97.1% 53.5%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.89 77.0 7.48e-01 91.2% 94.5%
3vkgA12 1.10.287.2610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.88 81.0 5.55e-01 100.0% 57.2%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.88 69.0 6.00e-01 83.8% 85.0%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.87 81.0 7.40e-01 98.5% 86.0%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.87 79.0 6.44e-01 95.6% 61.4%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.87 75.0 6.56e-01 91.2% 75.8%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.87 63.0 6.28e-01 75.0% 77.1%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.87 70.0 6.18e-01 85.3% 100.0%
6v9zA02 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.85 77.0 4.77e-01 95.6% 37.5%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.85 75.0 7.22e-01 94.1% 90.7%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.85 59.0 5.86e-01 72.1% 69.0%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.84 78.0 6.73e-01 100.0% 84.2%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.84 79.0 5.98e-01 100.0% 51.0%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.84 78.0 7.02e-01 100.0% 86.7%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.84 77.0 7.23e-01 98.5% 86.4%
4abxA02 6.10.140.1090 Special › Helix non-globular › Helix Hairpins › 0.83 71.0 6.46e-01 91.2% 77.0%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.82 72.0 7.43e-01 97.1% 96.9%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.81 68.0 5.19e-01 88.2% 48.9%
2fb5A01 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.80 69.0 6.76e-01 92.6% 94.4%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 71.0 6.08e-01 98.5% 89.7%
3zgxA02 6.10.140.1720 Special › Helix non-globular › Helix Hairpins › 0.80 71.0 6.41e-01 97.1% 83.5%
1t7sA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.80 71.0 5.65e-01 97.1% 51.9%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.79 69.0 6.60e-01 97.1% 89.9%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.79 63.0 6.74e-01 86.8% 100.0%
1w99A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.78 67.0 5.02e-01 97.1% 46.2%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.78 68.0 5.41e-01 95.6% 63.4%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.78 67.0 6.25e-01 95.6% 89.4%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.77 68.0 6.22e-01 97.1% 76.1%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 67.0 6.44e-01 94.1% 85.7%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 64.0 5.63e-01 95.6% 63.3%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 61.0 6.43e-01 86.8% 100.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 64.0 5.54e-01 97.1% 93.6%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.74 63.0 5.80e-01 100.0% 98.9%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 64.0 5.68e-01 100.0% 72.8%
4mrsA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.74 65.0 4.15e-01 100.0% 55.3%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.74 61.0 6.19e-01 92.6% 97.0%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.73 48.0 5.37e-01 70.6% 97.9%
1rq0A01 6.10.140.160 Special › Helix non-globular › Helix Hairpins › 0.72 60.0 5.71e-01 95.6% 79.5%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.70 47.0 5.14e-01 75.0% 92.3%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.70 49.0 4.67e-01 76.5% 61.7%
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.70 50.0 5.22e-01 76.5% 96.7%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.70 55.0 3.67e-01 85.3% 24.0%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.70 60.0 4.72e-01 97.1% 53.1%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.68 56.0 5.18e-01 91.2% 70.6%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 45.0 4.44e-01 76.5% 73.7%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 55.0 5.43e-01 100.0% 100.0%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 50.0 5.21e-01 89.7% 100.0%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4029610 3755.4.1.57 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › MSP1_C 0.96 89.0 5.37e-01 97.1% 24.0%
5029347 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.94 88.0 5.11e-01 98.5% 16.0%
3928077 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.94 84.0 6.28e-01 92.6% 51.0%
4945931 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.94 82.0 8.14e-01 91.2% 98.6%
4936790 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.93 86.0 7.20e-01 97.1% 80.0%
3598650 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.93 88.0 7.63e-01 98.5% 95.8%
3605626 192.12.1.0 ↗ alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM 0.93 81.0 6.78e-01 91.2% 70.5%
3520009 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.93 86.0 8.04e-01 97.1% 93.8%
3631582 604.7.1.0 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.92 73.0 6.24e-01 82.4% 70.0%
4646268 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.92 76.0 7.53e-01 86.8% 97.1%
3462297 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.92 85.0 8.17e-01 97.1% 93.3%
3693881 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.91 79.0 7.86e-01 91.2% 98.6%
5026881 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.91 80.0 7.74e-01 92.6% 96.0%
4934444 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.90 79.0 7.89e-01 92.6% 98.6%
3235327 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.90 83.0 5.64e-01 98.5% 32.6%
4543996 3600.1.1.1 ↗ alpha bundles › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › YlqD 0.89 76.0 6.38e-01 89.7% 66.7%
4665988 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.88 82.0 6.96e-01 100.0% 70.5%
3729994 3755.3.1.284 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Utp11 0.88 83.0 6.46e-01 98.5% 56.2%
4667192 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.88 79.0 6.91e-01 94.1% 72.6%
4034416 2004.1.1.481 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 0.87 83.0 4.97e-01 100.0% 36.9%
5063166 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.87 81.0 6.89e-01 100.0% 70.5%
3796505 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.87 78.0 6.93e-01 97.1% 95.8%
3649223 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.86 61.0 5.03e-01 73.5% 49.6%
4505128 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.85 80.0 7.10e-01 98.5% 77.8%
5072279 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.85 80.0 4.77e-01 100.0% 17.2%
5036054 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.85 78.0 4.61e-01 98.5% 30.7%
4400912 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.85 68.0 5.62e-01 83.8% 53.6%
3916884 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.84 72.0 7.44e-01 95.6% 95.4%
3682710 2004.1.1.529 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, DUF6469 0.84 75.0 4.42e-01 95.6% 15.9%
4370630 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.83 75.0 6.73e-01 95.6% 74.4%
3990125 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.82 74.0 6.34e-01 100.0% 70.5%
2388286 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.82 68.0 6.66e-01 89.7% 90.3%
5082509 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.81 68.0 5.34e-01 88.2% 57.7%
3781132 3755.4.1.48 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › V_ATPase_I 0.81 74.0 5.64e-01 100.0% 52.7%
3627873 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.76 70.0 6.79e-01 98.5% 89.3%
3201381 192.8.1.139 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Fung_rhodopsin 0.75 62.0 6.05e-01 95.6% 81.3%
2661265 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.73 61.0 5.79e-01 94.1% 84.1%
3461932 3922.1.1.189 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF630 0.73 65.0 5.81e-01 100.0% 85.3%
4806319 3755.1.1.2 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › YscO-like 0.71 61.0 5.76e-01 98.5% 98.8%
3788511 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.71 61.0 3.73e-01 100.0% 26.2%
3189035 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.68 58.0 5.65e-01 94.1% 88.0%
D3 medium residues 308-368
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u1nB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.94 88.0 5.34e-01 100.0% 19.8%
2honB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.87 75.0 4.75e-01 100.0% 21.3%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 3.39e-01 73.8% 62.0%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.60 49.0 3.56e-01 93.4% 91.7%
3k4oA00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.56 48.0 3.25e-01 100.0% 38.8%
2debA03 3.30.559.70 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Choline/Carnitine o-acyltransferase, domain 2 0.54 46.0 3.06e-01 100.0% 61.0%
1xdsB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.28e-01 75.4% 63.0%
2ywrA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.51 42.0 3.02e-01 100.0% 64.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1118688 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.97 92.0 5.23e-01 100.0% 13.4%
3810621 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.96 90.0 5.19e-01 100.0% 13.5%
1108429 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.96 91.0 5.21e-01 100.0% 13.5%
3641475 131.1.1.5 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc_2 0.96 91.0 5.23e-01 100.0% 13.4%
3305107 131.1.1.5 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc_2 0.95 90.0 5.22e-01 100.0% 13.9%
5074639 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.91 81.0 5.02e-01 100.0% 19.8%
4970001 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.90 75.0 4.41e-01 95.1% 13.5%
3596396 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.89 83.0 4.72e-01 100.0% 14.0%
5037358 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.86 73.0 5.07e-01 95.1% 30.3%
4971620 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.75 63.0 3.86e-01 100.0% 15.1%
4378587 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.71 60.0 3.69e-01 100.0% 17.2%
1145730 3841.1.1.0 ↗ 0.65 46.0 3.25e-01 100.0% 22.9%
3249793 5001.1.1.80 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Dicty_CAR 0.64 53.0 3.42e-01 93.4% 83.1%
5004081 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.60 51.0 3.28e-01 100.0% 23.1%
4998551 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.54 46.0 3.26e-01 100.0% 42.4%
4997796 2006.1.6.45 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › PF30231 0.52 45.0 2.94e-01 100.0% 49.1%
4941343 247.1.1.11 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.52 39.0 2.65e-01 88.5% 45.7%
3248047 3016.1.1.13 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SepSecS 0.50 37.0 2.91e-01 82.0% 84.9%
D4 medium residues 389-460
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 41.0 3.70e-01 100.0% 46.4%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 32.0 3.24e-01 97.2% 43.2%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.61 39.0 3.94e-01 100.0% 63.5%
4an8A02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.60 52.0 4.43e-01 100.0% 88.5%
3c1yA02 1.20.1260.110 Mainly Alpha › Up-down Bundle › Ferritin › DNA integrity scanning linker region 0.59 37.0 2.95e-01 98.6% 30.4%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.59 44.0 4.36e-01 100.0% 75.3%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 33.0 2.73e-01 100.0% 27.2%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 44.0 4.36e-01 100.0% 77.9%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 41.0 3.76e-01 77.8% 86.3%
4k7bA00 1.20.120.1740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sodium ion translocating NADH-quinone reductase subunit C-like 0.56 37.0 3.20e-01 97.2% 44.1%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.55 41.0 3.84e-01 100.0% 65.5%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.54 42.0 3.68e-01 100.0% 56.1%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.54 40.0 3.81e-01 100.0% 67.1%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 36.0 3.51e-01 98.6% 66.7%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 35.0 2.72e-01 72.2% 47.3%
5ts9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.50 44.0 3.45e-01 100.0% 72.0%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.50 38.0 3.72e-01 100.0% 73.2%
2qq8A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.50 34.0 3.15e-01 70.8% 65.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5062158 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.75 41.0 4.09e-01 100.0% 52.0%
3969942 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.71 45.0 3.78e-01 100.0% 40.0%
2674763 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.62 39.0 3.93e-01 100.0% 62.7%
3783776 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.58 43.0 3.89e-01 77.8% 83.2%
3200160 604.7.1.0 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.57 37.0 3.27e-01 98.6% 43.6%
3441901 632.1.1.13 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Rx_N 0.57 37.0 3.64e-01 98.6% 60.0%
4402843 604.1.1.20 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA 0.56 41.0 3.53e-01 100.0% 48.7%
3448091 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.55 43.0 3.67e-01 100.0% 52.6%
4365052 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.54 43.0 3.89e-01 100.0% 64.2%
5058630 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.54 39.0 4.12e-01 76.4% 100.0%
3498899 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.53 45.0 3.77e-01 100.0% 97.0%
4180835 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.53 47.0 4.82e-01 100.0% 98.6%
3876590 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.52 36.0 3.43e-01 98.6% 62.4%
4934327 604.5.1.1 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div 0.51 45.0 3.24e-01 100.0% 99.1%
3548194 192.2.1.18 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.50 37.0 3.30e-01 100.0% 52.7%
D5 medium residues 461-506_546-598
PDB
Domain cluster: rep: Phosphohydrolase__YP_009481642__Pandoravirus_neocaledonia__2107708__D414-457_497-544