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Phosphohydrolase

Euk-Vir

Pandoravirus_dulcis

Phosphohydrolase__YP_008318803__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008318803 ↗
Protein ID:
Phosphohydrolase
Kingdom:
euk

Quality

85.7 mean pLDDT

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-149
PDB
Domain cluster: rep: MW302330.1__QTJ62991.1__X__00013__D3-108
D2 high residues 155-251
PDB
Domain cluster: rep: metal-dependent_phosphohydrolase__YP_009507229__Tunisvirus_fontaine2__1421067__D116-202
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b57A02 1.20.58.1910 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.92 73.0 7.53e-01 100.0% 86.0%
3gw7A00 1.10.3210.50 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.83 72.0 5.39e-01 100.0% 40.9%
2pjqA02 1.20.58.1910 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 75.0 7.04e-01 100.0% 81.7%
3ctwB00 1.10.8.930 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465 0.74 43.0 4.03e-01 80.4% 47.5%
1ni3A03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.68 37.0 3.88e-01 73.2% 57.1%
3ay5A01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.58 48.0 4.30e-01 99.0% 64.7%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 49.0 4.75e-01 100.0% 86.1%
3pt1A02 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.56 41.0 3.83e-01 77.3% 72.5%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 50.0 4.77e-01 100.0% 92.0%
2f76X00 1.10.150.490 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Retroviral GAG p10 protein 0.55 37.0 3.73e-01 92.8% 68.0%
7t7kA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.55 42.0 3.91e-01 80.4% 72.9%
4f92B10 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.52 44.0 3.86e-01 92.8% 84.6%
6wfqC01 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.51 42.0 3.73e-01 89.7% 76.1%
7ezyA01 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.51 33.0 3.19e-01 94.8% 54.8%
2o01L01 1.20.1240.10 Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI 0.51 43.0 4.14e-01 92.8% 94.6%
4l7nA01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.51 43.0 3.77e-01 90.7% 64.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044683 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.96 68.0 5.24e-01 96.9% 37.4%
4941136 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.94 67.0 5.21e-01 96.9% 38.4%
4950795 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.93 69.0 5.31e-01 100.0% 38.3%
4945175 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.93 69.0 5.21e-01 100.0% 36.1%
3726887 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.92 68.0 4.97e-01 99.0% 32.9%
3179352 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.87 70.0 4.90e-01 100.0% 30.6%
4789 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.85 79.0 5.97e-01 100.0% 45.5%
3943504 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.84 74.0 5.40e-01 99.0% 38.7%
5045848 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.83 64.0 4.88e-01 99.0% 38.4%
4984229 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.83 77.0 5.75e-01 100.0% 44.0%
3260673 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.82 66.0 4.93e-01 84.5% 39.1%
4985686 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.82 74.0 5.46e-01 99.0% 41.8%
4791 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.81 75.0 5.67e-01 100.0% 45.6%
5058334 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.81 73.0 5.43e-01 99.0% 42.8%
3449702 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.80 76.0 5.54e-01 100.0% 42.9%
5004208 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.75 67.0 5.03e-01 97.9% 43.3%
3510771 610.4.1.0 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain 0.74 52.0 5.22e-01 96.9% 71.0%
3841891 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.65 45.0 2.68e-01 71.1% 17.8%
4929993 4025.1.1.2 ↗ alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › NiFeSe_Hases 0.63 44.0 3.09e-01 72.2% 97.0%
3499436 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 42.0 2.39e-01 99.0% 6.2%
3264561 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.57 49.0 3.61e-01 100.0% 36.7%
4961944 192.15.1.225 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF4212 0.56 39.0 3.96e-01 72.2% 83.2%
3343216 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.53 35.0 3.27e-01 94.8% 53.3%
4514466 132.1.1.0 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) 0.52 36.0 3.66e-01 70.1% 100.0%
3925770 4156.1.1.1 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 0.51 43.0 4.00e-01 92.8% 99.2%
4138073 1002.1.1.1 ↗ alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.50 44.0 4.06e-01 99.0% 73.8%
3522428 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.50 37.0 3.47e-01 91.8% 63.3%