Pol

Euk-Vir

Rat_coronavirus_Parker

Pol__YP_009924378__Rat_coronavirus_Parker__502102

Identity

88.2 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Nidovirales› Coronaviridae› Betacoronavirus› Rat_coronavirus_Parker

TaxID: 502102

View cluster (23 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-123

PDB

Domain cluster: rep: nsp12__YP_008439222__Bat_coronavirus_CDPHE15_USA_2006__1384461__D18-119

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06478.20 best	CoV_RPol_N	127.8	6.90e-37	89.4%	30.3%

D2 medium residues 124-256

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__NP_740629__Infectious_bronchitis_virus__11120__D128-266

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06478.20 best	CoV_RPol_N	219.4	1.00e-64	100.0%	38.0%

D3 medium residues 257-321

PDB

Domain cluster: rep: coronavirus_nsp9_-RdRp-__NP_742138__Bovine_coronavirus__11128__D257-321

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06478.20 best	CoV_RPol_N	115.0	5.60e-33	100.0%	18.3%

D4 medium residues 412-458_474-581

PDB

Domain cluster: rep: NIa__YP_003620390__Freesia_mosaic_virus__421012__D109-224

D5 medium residues 459-473_684-734

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009555260__Human_coronavirus_OC43__31631__D685-750

D6 medium residues 582-617_735-827

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009944302__Betacoronavirus_England_1__1263720__D461-490_606-620_725-816

D7 medium residues 618-683

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009924352__Murine_hepatitis_virus__11138__D618-682

D8 medium residues 828-920

PDB

Domain cluster: rep: NSP12__YP_009825029__Duck_coronavirus__300188__D836-945