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Poly_polymerase_small_subunit_-VP39-
Euk-VirNY_014_poxvirus
Poly_polymerase_small_subunit_-VP39-__YP_009408475__NY_014_poxvirus__2025360
Identity
- Accession:
- YP_009408475 ↗
- Protein ID:
- Poly_polymerase_small_subunit_-VP39-
- Kingdom:
- euk
Quality
87.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Centapoxvirus›
NY_014_poxvirus
TaxID: 2025360
Cluster
View cluster (66 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-15_244-294
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01358.25 best | PARP_regulatory | 63.9 | 1.70e-17 | 96.9% | 20.2% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1eamA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.99 | 95.0 | 5.91e-01 | 100.0% | 98.2% |
| 3gkeA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.55 | 37.0 | 2.66e-01 | 70.3% | 79.5% |
| 5dicA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.53 | 37.0 | 3.04e-01 | 71.9% | 87.8% |
| 2w3qA02 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.51 | 42.0 | 3.12e-01 | 90.6% | 67.1% |
| 2xubA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 36.0 | 3.23e-01 | 89.1% | 53.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 9332 | 2003.1.5.11 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PARP_regulatory | 0.99 | 95.0 | 5.89e-01 | 100.0% | 98.3% |
| 2966880 | 149.1.1.0 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 | 0.61 | 43.0 | 2.61e-01 | 95.3% | 11.8% |
| 4943201 | 181.1.1.32 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54 | 0.56 | 40.0 | 3.66e-01 | 75.0% | 88.2% |
| 4620518 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.56 | 40.0 | 3.41e-01 | 78.1% | 62.7% |
| 3554392 | 109.4.1.1148 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_NUP160_120_M | 0.54 | 42.0 | 3.19e-01 | 89.1% | 57.6% |
| None | — | 0.51 | 40.0 | 2.58e-01 | 95.3% | 85.8% | |
| 3678578 | 4126.1.1.1 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA | 0.50 | 42.0 | 2.69e-01 | 100.0% | 84.8% |
D2
high
residues 24-233
Domain cluster:
rep: polyA_polymerase_reg_subunit__YP_009001345__Pithovirus_sibericum__1450746__D33-211
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01358.25 best | PARP_regulatory | 336.5 | 1.50e-100 | 100.0% | 71.2% |