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PrGVORF18

Euk-Vir

Artogeia_rapae_granulovirus

PrGVORF18__YP_003429342__Artogeia_rapae_granulovirus__362830

Identity

Accession:
YP_003429342 ↗
Protein ID:
PrGVORF18
Kingdom:
euk

Quality

74.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Betabaculovirus_arrapae

TaxID: 362830

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-78
PDB
Domain cluster: rep: IMGVR_UViG_3300000568_000096-3300000568-Draft_1006303631__D8-117
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.72 65.0 5.95e-01 100.0% 97.0%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.71 64.0 5.76e-01 100.0% 89.6%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.65 34.0 3.96e-01 88.5% 70.9%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.64 57.0 5.29e-01 100.0% 79.8%
1tolA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.63 36.0 3.55e-01 85.9% 53.7%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.59 32.0 2.67e-01 94.9% 31.3%
1z01A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 35.0 3.88e-01 97.4% 77.0%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 33.0 3.72e-01 97.4% 75.9%
1sseB00 1.10.238.100 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › YAP1 redox domain. Chain B 0.54 39.0 3.87e-01 78.2% 74.4%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.54 37.0 3.75e-01 73.1% 100.0%
3dxpA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 42.0 3.98e-01 85.9% 77.4%
6sulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 40.0 3.62e-01 83.3% 80.6%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.52 34.0 3.51e-01 88.5% 71.8%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 35.0 3.08e-01 100.0% 46.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1790169 101.1.9.7 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Baculo_PEP_N 0.89 83.0 7.37e-01 100.0% 80.2%
3968916 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.81 76.0 6.77e-01 100.0% 81.0%
3798287 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.74 68.0 6.30e-01 98.7% 100.0%
4998593 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.74 66.0 5.73e-01 97.4% 74.8%
3893451 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.73 66.0 5.98e-01 100.0% 90.5%
4003595 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.73 66.0 5.57e-01 100.0% 72.9%
3480621 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 66.0 6.20e-01 100.0% 98.9%
3529465 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.72 66.0 5.94e-01 100.0% 91.4%
3525074 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.72 63.0 6.04e-01 94.9% 100.0%
3230106 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 64.0 5.90e-01 100.0% 98.0%
3932937 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.71 64.0 5.97e-01 98.7% 98.9%
3888996 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.70 64.0 5.96e-01 100.0% 100.0%
3400699 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.69 62.0 5.58e-01 98.7% 98.1%
3516620 101.1.9.107 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PF25867 0.68 58.0 5.48e-01 93.6% 100.0%
3782429 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 59.0 5.46e-01 100.0% 98.0%
3214527 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 59.0 5.08e-01 100.0% 83.2%
3632939 101.1.9.80 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › YOL029C_N 0.62 51.0 4.74e-01 91.0% 96.0%
4223228 101.1.9.21 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Swi6_N 0.61 54.0 5.20e-01 98.7% 96.7%
3679774 219.1.1.23 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.61 39.0 2.37e-01 88.5% 9.9%
3619623 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.60 46.0 5.06e-01 100.0% 98.5%
5057035 101.1.9.151 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Zn_ribbon_TFIIB 0.55 44.0 4.23e-01 88.5% 92.2%
4081039 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.54 35.0 3.72e-01 96.2% 74.3%
4962687 4972.1.1.1 ↗ beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C 0.54 40.0 3.46e-01 79.5% 75.2%
5064066 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.54 36.0 3.86e-01 93.6% 79.4%
5022933 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.53 35.0 4.13e-01 89.7% 96.4%
5046362 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 45.0 3.16e-01 97.4% 84.4%
4961304 4.10.1.0 ↗ beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain 0.52 39.0 4.30e-01 85.9% 96.9%
3949260 4120.1.1.0 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.52 36.0 3.18e-01 71.8% 86.4%
3960063 267.1.1.2 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Hydrolase 0.51 35.0 3.01e-01 71.8% 77.0%
D2 medium residues 79-129
PDB