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PrGVORF29
Euk-VirArtogeia_rapae_granulovirus
PrGVORF29__YP_003429353__Artogeia_rapae_granulovirus__362830
Identity
- Accession:
- YP_003429353 ↗
- Protein ID:
- PrGVORF29
- Kingdom:
- euk
Quality
77.6
mean pLDDT
Taxonomy
TaxID: 362830
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-36_72-100_158-189
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19181.6 best | DUF5863 | 29.9 | 6.30e-07 | 42.3% | 21.9% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xriA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.72 | 40.0 | 3.43e-01 | 100.0% | 35.1% |
| 3gyqA01 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.66 | 43.0 | 4.34e-01 | 100.0% | 66.0% |
| 4bucA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 36.0 | 3.73e-01 | 97.9% | 56.4% |
| 5c3uA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 36.0 | 3.63e-01 | 97.9% | 54.2% |
| 3kksB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.62 | 39.0 | 3.36e-01 | 100.0% | 40.8% |
| 3dnfA03 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.61 | 36.0 | 3.62e-01 | 100.0% | 56.6% |
| 4ntdA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 35.0 | 3.37e-01 | 97.9% | 48.2% |
| 3r0xA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 35.0 | 3.22e-01 | 97.9% | 43.1% |
| 5d84A02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 34.0 | 3.30e-01 | 99.0% | 47.7% |
| 5ybwA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 33.0 | 3.35e-01 | 97.9% | 53.1% |
| 3obyA03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.58 | 38.0 | 3.85e-01 | 99.0% | 66.7% |
| 3ixqA01 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 33.0 | 2.92e-01 | 99.0% | 38.1% |
| 1tiyA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 38.0 | 3.25e-01 | 99.0% | 44.9% |
| 6qkgA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 34.0 | 3.28e-01 | 97.9% | 55.0% |
| 4v0bA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.52 | 33.0 | 3.94e-01 | 93.8% | 100.0% |
| 4ezbA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 41.0 | 3.43e-01 | 87.6% | 89.0% |
| 3oj0A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 35.0 | 3.13e-01 | 100.0% | 49.3% |
| 3i9sA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 35.0 | 3.03e-01 | 100.0% | 42.9% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3590387 | 2007.2.2.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › PTS_IIB | 0.83 | 42.0 | 4.25e-01 | 100.0% | 49.5% |
| 5036180 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.78 | 43.0 | 4.39e-01 | 100.0% | 55.8% |
| 3670715 | 2487.1.1.1 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cpn60_TCP1 | 0.70 | 33.0 | 3.22e-01 | 89.7% | 40.0% |
| 4447519 | 2003.1.8.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like › MurD_N | 0.69 | 38.0 | 4.01e-01 | 97.9% | 58.9% |
| 5031066 | 7518.1.1.0 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like | 0.65 | 36.0 | 3.20e-01 | 96.9% | 37.1% |
| 4927334 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.59 | 40.0 | 3.99e-01 | 100.0% | 68.4% |
| 4932504 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.59 | 41.0 | 4.18e-01 | 99.0% | 73.7% |
| 4934112 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 39.0 | 3.58e-01 | 100.0% | 54.6% |
| 4228579 | 2003.1.8.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like › MurD-like_N | 0.55 | 38.0 | 3.84e-01 | 100.0% | 71.0% |
| 5018056 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.53 | 42.0 | 3.69e-01 | 100.0% | 57.9% |
| 4429845 | 2003.1.1.74 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Glu_dehyd_C | 0.52 | 34.0 | 3.09e-01 | 99.0% | 48.5% |
| 5012939 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.52 | 40.0 | 3.72e-01 | 100.0% | 65.8% |
| 5045868 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.51 | 40.0 | 3.57e-01 | 100.0% | 59.3% |
| 4325801 | 7568.1.1.1 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT | 0.51 | 35.0 | 3.70e-01 | 100.0% | 77.8% |
| 4152817 | 2003.1.14.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace, OTCace_N | 0.51 | 40.0 | 2.84e-01 | 85.6% | 65.7% |
| 4600820 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.50 | 32.0 | 3.73e-01 | 95.9% | 96.9% |
| 4663296 | 7501.1.1.2 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › RibD_C | 0.50 | 41.0 | 3.09e-01 | 100.0% | 38.2% |
D2
medium
residues 37-71_101-157
Domain cluster:
representative
Pfam (2)
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4262401 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.59 | 45.0 | 3.10e-01 | 82.6% | 79.1% |
| 4968964 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.58 | 43.0 | 3.42e-01 | 80.4% | 74.4% |