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PrGVORF83
Euk-VirArtogeia_rapae_granulovirus
PrGVORF83__YP_003429407__Artogeia_rapae_granulovirus__362830
Identity
- Accession:
- YP_003429407 ↗
- Protein ID:
- PrGVORF83
- Kingdom:
- euk
Quality
88.4
mean pLDDT
Taxonomy
TaxID: 362830
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-127
Domain cluster:
rep: ORF103__YP_009345821__Mythimna_unipuncta_granulovirus_B__2169746__D14-100
D2
high
residues 139-246
Domain cluster:
rep: Bro25__YP_009702174__Heliothis_virescens_ascovirus_3g__1246651__D4-128
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02498.23 best | Bro-N | 30.8 | 5.10e-07 | 84.3% | 79.2% |
D3
high
residues 273-378
Domain cluster:
rep: ORF103__YP_009345821__Mythimna_unipuncta_granulovirus_B__2169746__D14-100
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d4uA00 | 3.90.530.10 | Alpha Beta › Alpha-Beta Complex › Nucleotide Excision Repair Protein XPA (XPA-MBD); B Chain A › XPA C-terminal domain | 0.66 | 43.0 | 4.28e-01 | 71.7% | 63.1% |
| 1bm8A00 | 3.10.260.10 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain | 0.63 | 49.0 | 5.08e-01 | 90.6% | 89.9% |
| 2xfvA00 | 3.10.260.30 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › | 0.56 | 48.0 | 4.86e-01 | 93.4% | 99.1% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.56 | 26.0 | 3.03e-01 | 72.6% | 59.7% |
| 2ogqA01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.55 | 40.0 | 3.78e-01 | 98.1% | 64.3% |
| 1lxjA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 31.0 | 3.20e-01 | 84.9% | 57.3% |
| 2q18X01 | 3.10.330.40 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.54 | 30.0 | 3.58e-01 | 97.2% | 81.4% |
| 4lhfA00 | 6.10.200.10 | Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox | 0.54 | 31.0 | 3.58e-01 | 70.8% | 77.2% |
| 1jfiB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.53 | 42.0 | 3.81e-01 | 93.4% | 64.4% |
| 5y27A00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.51 | 39.0 | 4.12e-01 | 92.5% | 87.8% |
| 2kj8A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.51 | 40.0 | 3.89e-01 | 100.0% | 74.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954530 | 101.1.9.143 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM | 0.69 | 58.0 | 5.64e-01 | 90.6% | 100.0% |
| 3163642 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.68 | 61.0 | 6.07e-01 | 97.2% | 97.3% |
| 3184841 | 376.1.1.102 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26191 | 0.67 | 41.0 | 3.74e-01 | 95.3% | 46.4% |
| 3486523 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.65 | 40.0 | 4.29e-01 | 74.5% | 71.1% |
| 2411452 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.65 | 55.0 | 5.03e-01 | 97.2% | 71.1% |
| 3833341 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 32.0 | 3.42e-01 | 96.2% | 53.7% |
| 3798434 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.64 | 49.0 | 4.79e-01 | 79.2% | 77.0% |
| 3740323 | 101.1.9.6 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N | 0.64 | 53.0 | 5.21e-01 | 99.1% | 82.6% |
| 3203041 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.64 | 53.0 | 5.41e-01 | 89.6% | 94.0% |
| 3629193 | 101.1.9.23 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › TdIF1_2nd | 0.64 | 48.0 | 4.75e-01 | 80.2% | 76.5% |
| 3983963 | 101.1.9.41 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N | 0.62 | 52.0 | 5.23e-01 | 90.6% | 100.0% |
| 3171223 | 101.1.9.6 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N | 0.62 | 50.0 | 5.04e-01 | 97.2% | 89.4% |
| 3209019 | 376.1.1.102 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26191 | 0.60 | 39.0 | 3.76e-01 | 95.3% | 57.5% |
| 4572703 | 101.1.9.6 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N | 0.57 | 50.0 | 4.70e-01 | 100.0% | 80.7% |
| 3176091 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.56 | 46.0 | 3.72e-01 | 90.6% | 73.6% |
| 3267766 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.55 | 25.0 | 2.59e-01 | 84.0% | 40.0% |
| 3520270 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.51 | 30.0 | 3.08e-01 | 87.7% | 59.0% |