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PrGVORF96
Euk-VirArtogeia_rapae_granulovirus
PrGVORF96__YP_003429420__Artogeia_rapae_granulovirus__362830
Identity
- Accession:
- YP_003429420 ↗
- Protein ID:
- PrGVORF96
- Kingdom:
- euk
Quality
75.1
mean pLDDT
Taxonomy
TaxID: 362830
Cluster
View cluster (46 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-88
Domain cluster:
rep: PIF-6__YP_010087092__Spodoptera_eridania_nucleopolyhedrovirus__2315721__D4-79
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05341.18 best | PIF6 | 101.2 | 4.10e-29 | 86.2% | 74.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.59 | 36.0 | 3.81e-01 | 95.4% | 67.5% |
| 2be4A02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.59 | 47.0 | 4.48e-01 | 97.7% | 74.3% |
| 2be4A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 44.0 | 4.56e-01 | 96.6% | 88.9% |
| 1f1mA00 | 1.20.120.240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 | 0.53 | 46.0 | 3.86e-01 | 100.0% | 68.5% |
| 2m7bA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.50 | 35.0 | 3.65e-01 | 77.0% | 81.8% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164568 | 304.55.2.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp | 0.61 | 47.0 | 3.84e-01 | 83.9% | 71.8% |
| 4029060 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.60 | 50.0 | 3.88e-01 | 89.7% | 51.6% |
| 3839290 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.59 | 47.0 | 4.62e-01 | 87.4% | 80.0% |
| 3900211 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.59 | 42.0 | 2.95e-01 | 75.9% | 94.5% |
| 3965471 | 2008.8.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › CglI restriction endonuclease H subunit C-terminal domain › CglI restriction endonuclease H subunit C-terminal domain › PF31274 | 0.57 | 49.0 | 4.26e-01 | 98.9% | 89.3% |
| 4460735 | 3264.1.1.0 ↗ | 0.56 | 42.0 | 3.46e-01 | 100.0% | 44.5% | |
| 5047257 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.56 | 44.0 | 3.76e-01 | 98.9% | 52.9% |
| 3939262 | 213.1.1.34 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_13 | 0.56 | 47.0 | 3.85e-01 | 97.7% | 67.4% |
| 4289006 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.55 | 37.0 | 3.62e-01 | 100.0% | 63.2% |
| 3594137 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.53 | 46.0 | 3.38e-01 | 98.9% | 92.4% |
| 3194623 | 101.1.2.79 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 | 0.53 | 36.0 | 3.11e-01 | 70.1% | 50.0% |
| 5023789 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.52 | 37.0 | 3.76e-01 | 86.2% | 75.3% |
| 3710096 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 40.0 | 4.10e-01 | 87.4% | 97.6% |
| 5048742 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.51 | 35.0 | 2.89e-01 | 70.1% | 53.3% |
| None | — | 0.51 | 44.0 | 2.55e-01 | 100.0% | 50.4% | |
| 3631345 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 43.0 | 3.93e-01 | 98.9% | 92.0% |
| 3199939 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.50 | 42.0 | 3.74e-01 | 95.4% | 89.2% |