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Protein_kinase

Euk-Vir

Pandoravirus_dulcis

Protein_kinase__YP_008319251__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008319251 ↗
Protein ID:
Protein_kinase
Kingdom:
euk

Quality

54.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 493-598_617-648
PDB
Domain cluster: rep: Serine_Threonine_kinase__YP_007354522__Acanthamoeba_polyphaga_moumouvirus__1269028__D187-304
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00069.32 best Pkinase 55.2 1.00e-14 97.8% 41.6%
D2 high residues 761-855_867-922
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.90 60.0 6.98e-01 78.1% 90.4%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.89 60.0 6.91e-01 78.8% 90.3%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.82 51.0 6.38e-01 74.8% 99.0%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.80 53.0 6.28e-01 76.8% 97.1%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.79 54.0 6.22e-01 77.5% 93.8%
3n00A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.66 50.0 4.67e-01 78.1% 89.1%
4akgA11 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.63 47.0 3.87e-01 77.5% 64.9%
3n3dB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.61 45.0 3.56e-01 76.8% 62.3%
3lomA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.59 44.0 3.59e-01 76.8% 74.7%
2pmiB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 54.0 4.78e-01 98.7% 84.5%
4wk5A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.59 44.0 3.75e-01 78.8% 79.7%
4xaiB02 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.58 51.0 4.67e-01 95.4% 92.9%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 51.0 4.73e-01 98.0% 82.6%
5eroA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.56 39.0 3.17e-01 70.9% 64.8%
1jfaB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.56 50.0 3.85e-01 98.0% 91.1%
2b1eA04 1.20.1280.170 Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 0.52 27.0 2.90e-01 85.4% 57.5%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.51 37.0 3.89e-01 76.8% 89.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3582614 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.89 60.0 6.28e-01 80.8% 74.3%
3816829 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.81 54.0 5.35e-01 77.5% 63.7%
3641850 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.80 60.0 6.12e-01 80.8% 80.0%
3642607 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.76 54.0 5.96e-01 76.2% 88.0%
3606890 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.73 56.0 4.69e-01 78.1% 51.7%
3714124 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.72 60.0 6.18e-01 86.8% 94.5%
3613305 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.71 64.0 5.12e-01 96.0% 88.1%
4946658 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.70 51.0 5.20e-01 77.5% 77.2%
3720244 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.70 65.0 5.25e-01 100.0% 54.5%
4026729 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.70 51.0 5.33e-01 76.2% 81.4%
3640213 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.69 60.0 5.57e-01 92.1% 84.3%
3512795 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.69 56.0 5.54e-01 91.4% 81.2%
3781490 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.69 56.0 5.63e-01 92.7% 86.0%
3172088 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.67 57.0 5.69e-01 100.0% 87.7%
3253586 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.67 56.0 5.78e-01 91.4% 93.8%
3692702 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.67 56.0 5.01e-01 89.4% 80.0%
3708827 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.65 59.0 5.71e-01 98.0% 87.1%
4636218 108.2.1.2 ↗ alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › OBP47_like 0.53 35.0 3.43e-01 72.8% 61.3%
3629688 3651.1.1.0 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.51 28.0 3.04e-01 100.0% 60.8%
4024777 5081.1.1.0 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like 0.51 38.0 3.66e-01 77.5% 80.6%
3945748 162.1.1.1 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.51 32.0 3.85e-01 80.1% 100.0%
D3 medium residues 170-285_364-422
PDB
Domain cluster: rep: ORF36__YP_438159__Ovine_gammaherpesvirus_2__10398__D54-226
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00069.32 best Pkinase 58.5 9.60e-16 100.0% 53.0%