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QC4_scaffold_20_prodigal-single.1__X__X__00064

Bact-Vir

QC4_scaffold_20_prodigal-single.1__X__X__00064

Identity

Kingdom:
phage

Quality

88.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-81
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13280.13 best WYL 30.8 3.20e-07 94.9% 95.7%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 48.0 5.42e-01 79.7% 88.1%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 54.0 4.76e-01 100.0% 58.1%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 43.0 5.01e-01 82.3% 100.0%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.67 60.0 5.79e-01 100.0% 93.3%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 40.0 3.77e-01 100.0% 49.5%
3lkmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 49.0 3.92e-01 78.5% 88.5%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 4.37e-01 97.5% 46.4%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.66 59.0 4.17e-01 100.0% 34.6%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.32e-01 94.9% 98.4%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 49.0 5.19e-01 98.7% 91.4%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 5.32e-01 96.2% 95.8%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 49.0 5.07e-01 94.9% 86.7%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 57.0 4.71e-01 100.0% 70.2%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 5.39e-01 100.0% 98.6%
1dkiC01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.63 55.0 4.09e-01 100.0% 38.7%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 5.24e-01 98.7% 97.2%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.62 55.0 4.70e-01 100.0% 62.1%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.91e-01 94.9% 100.0%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.87e-01 96.2% 95.4%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 4.51e-01 93.7% 80.3%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.97e-01 96.2% 90.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 44.0 4.74e-01 98.7% 93.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.58e-01 98.7% 92.3%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.75e-01 97.5% 98.4%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.59 51.0 4.76e-01 100.0% 84.6%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.59 51.0 4.45e-01 100.0% 85.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.64e-01 98.7% 92.8%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.84e-01 92.4% 100.0%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 40.0 3.75e-01 98.7% 57.4%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.57 42.0 3.73e-01 86.1% 52.1%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 41.0 3.62e-01 78.5% 72.0%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 45.0 4.21e-01 94.9% 70.9%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 40.0 3.37e-01 77.2% 69.0%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.53 43.0 3.26e-01 92.4% 88.7%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.53 46.0 3.95e-01 100.0% 63.6%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.53 43.0 2.80e-01 89.9% 20.7%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 42.0 2.72e-01 92.4% 97.6%
2bz0A00 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.52 38.0 2.95e-01 77.2% 81.0%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.36e-01 87.3% 64.4%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.78e-01 94.9% 94.9%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 40.0 2.71e-01 86.1% 32.4%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 42.0 3.43e-01 91.1% 98.0%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 35.0 3.12e-01 78.5% 47.9%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.19e-01 87.3% 73.5%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 41.0 2.71e-01 92.4% 97.3%
5ixgA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.50 40.0 3.23e-01 91.1% 98.8%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.50 39.0 3.19e-01 92.4% 44.4%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.96 86.0 8.12e-01 100.0% 81.1%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.95 80.0 7.75e-01 94.9% 81.2%
3972550 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.94 84.0 7.61e-01 100.0% 73.0%
3290160 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.93 78.0 7.84e-01 100.0% 86.3%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.93 84.0 7.80e-01 100.0% 77.9%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.87 81.0 7.14e-01 100.0% 70.9%
3967986 4.7.1.2 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.85 69.0 6.92e-01 94.9% 85.0%
3587259 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.84 75.0 7.16e-01 100.0% 82.2%
2502914 4.31.1.0 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.83 77.0 6.40e-01 100.0% 65.4%
5061147 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 72.0 6.72e-01 96.2% 77.9%
4976092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 67.0 6.41e-01 100.0% 77.8%
4977206 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 51.0 5.73e-01 92.4% 88.3%
3940730 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 58.0 5.47e-01 98.7% 68.4%
4051081 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.73 53.0 5.99e-01 93.7% 100.0%
3750522 4.1.1.218 beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.72 52.0 4.61e-01 82.3% 53.6%
4851967 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.72 52.0 5.78e-01 93.7% 96.8%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 55.0 5.94e-01 96.2% 100.0%
3484700 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.71 54.0 5.02e-01 96.2% 65.0%
4954224 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.70 62.0 5.80e-01 100.0% 80.0%
3511007 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 55.0 4.80e-01 96.2% 55.8%
3255397 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 64.0 5.06e-01 100.0% 69.7%
150293 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.68 61.0 5.77e-01 100.0% 87.5%
4335575 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 54.0 3.00e-01 91.1% 7.3%
3951961 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.67 53.0 5.05e-01 93.7% 71.6%
4055974 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.67 59.0 5.11e-01 98.7% 68.0%
3842361 1.1.5.76 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.67 59.0 5.62e-01 98.7% 91.6%
3482706 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 58.0 4.54e-01 96.2% 57.1%
3738626 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.67 60.0 4.88e-01 100.0% 56.6%
4936914 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 52.0 4.81e-01 98.7% 64.8%
3449235 4.1.1.173 beta barrels › SH3 › SH3 › SH3 › DUF4216 0.66 60.0 4.65e-01 100.0% 83.5%
3645842 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.66 52.0 5.19e-01 84.8% 83.7%
1557343 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.65 49.0 5.19e-01 98.7% 91.4%
3912956 4.1.1.56 beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.65 50.0 4.41e-01 87.3% 55.0%
3623084 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 4.84e-01 97.5% 60.8%
3185321 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.65 52.0 5.38e-01 100.0% 93.3%
1112010 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.65 49.0 5.07e-01 94.9% 86.7%
3609256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.14e-01 100.0% 82.4%
3429465 4.1.1.173 beta barrels › SH3 › SH3 › SH3 › DUF4216 0.64 58.0 4.64e-01 100.0% 66.5%
3934278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.85e-01 98.7% 66.1%
3188394 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.64 58.0 5.01e-01 100.0% 75.8%
4542692 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.45e-01 98.7% 92.9%
4284764 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 48.0 5.21e-01 100.0% 100.0%
3940233 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.95e-01 98.7% 74.5%
4944596 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.62 54.0 4.70e-01 98.7% 67.2%
5053224 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.89e-01 88.6% 100.0%
3650798 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 54.0 4.79e-01 100.0% 97.4%
3391728 3459.1.1.1 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.61 32.0 3.14e-01 82.3% 45.2%
3518287 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.61 52.0 4.58e-01 93.7% 97.4%
3218475 4.1.1.390 beta barrels › SH3 › SH3 › SH3 › PF29855 0.59 52.0 4.56e-01 98.7% 71.7%
3719860 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.52e-01 100.0% 69.6%
3784770 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 49.0 5.08e-01 93.7% 100.0%
3483489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.44e-01 98.7% 85.3%
3188712 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.58 51.0 4.73e-01 100.0% 95.0%
4997059 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.57 45.0 4.61e-01 98.7% 92.0%
4931072 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.57 43.0 4.47e-01 98.7% 92.9%
3451173 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 49.0 4.73e-01 100.0% 90.0%
5067458 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 36.0 4.17e-01 84.8% 98.2%
5073192 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.54 39.0 4.16e-01 91.1% 90.8%
4954092 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 38.0 3.53e-01 74.7% 93.3%
4936151 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 43.0 3.53e-01 94.9% 50.6%
3263735 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 43.0 2.79e-01 89.9% 21.1%
4945424 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 37.0 3.12e-01 73.4% 75.4%
4649416 330.6.1.0 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.52 44.0 4.35e-01 97.5% 95.3%
3263743 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.51 43.0 3.73e-01 93.7% 99.2%
4028467 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.51 44.0 3.08e-01 100.0% 73.1%
3832622 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 38.0 2.56e-01 79.7% 26.0%
4030120 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 2.58e-01 92.4% 43.4%
4033933 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.51 41.0 3.67e-01 89.9% 85.2%