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QC4_scaffold_20_prodigal-single.1__X__X__00065
Bact-VirQC4_scaffold_20_prodigal-single.1__X__X__00065
Identity
- Kingdom:
- phage
Quality
79.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-48
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a5zD02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 57.0 | 4.79e-01 | 89.5% | 82.8% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.67 | 55.0 | 4.49e-01 | 100.0% | 51.2% |
| 2i5hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 55.0 | 4.59e-01 | 100.0% | 94.4% |
| 3qokA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.66 | 48.0 | 3.76e-01 | 86.8% | 37.1% |
| 1ygyB03 | 3.30.1330.90 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 | 0.62 | 49.0 | 3.53e-01 | 100.0% | 30.9% |
| 2wkcB00 | 2.40.50.400 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein | 0.62 | 48.0 | 3.72e-01 | 89.5% | 46.1% |
| 3v5qB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 48.0 | 3.94e-01 | 100.0% | 87.4% |
| 5jh8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.62 | 46.0 | 3.96e-01 | 84.2% | 49.3% |
| 1auuA00 | 2.30.24.10 | Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain | 0.61 | 48.0 | 4.47e-01 | 100.0% | 87.3% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.61 | 44.0 | 4.06e-01 | 84.2% | 57.9% |
| 5xfoA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 39.0 | 3.49e-01 | 78.9% | 41.1% |
| 2cg7A01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.60 | 42.0 | 4.07e-01 | 71.1% | 67.4% |
| 2af5A01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.60 | 44.0 | 4.26e-01 | 100.0% | 87.0% |
| 1clwA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.60 | 49.0 | 2.76e-01 | 100.0% | 7.7% |
| 3h79A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 44.0 | 3.35e-01 | 92.1% | 77.4% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 42.0 | 3.90e-01 | 100.0% | 84.4% |
| 1ei5A02 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 42.0 | 3.54e-01 | 97.4% | 42.7% |
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.56 | 41.0 | 4.11e-01 | 84.2% | 82.1% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.56 | 41.0 | 4.01e-01 | 84.2% | 76.2% |
| 3wa1A01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 40.0 | 2.84e-01 | 89.5% | 56.2% |
| 2wfwA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 42.0 | 3.84e-01 | 92.1% | 81.0% |
| 3ednA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.55 | 46.0 | 3.23e-01 | 100.0% | 53.7% |
| 3o46A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.55 | 41.0 | 3.50e-01 | 100.0% | 82.1% |
| 2riqA02 | 2.20.25.630 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.54 | 39.0 | 3.59e-01 | 89.5% | 56.7% |
| 1tk7A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.54 | 37.0 | 3.76e-01 | 94.7% | 78.4% |
| 1y00A00 | 2.60.40.4380 | Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA | 0.52 | 36.0 | 3.25e-01 | 76.3% | 47.5% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3929758 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.84 | 64.0 | 5.59e-01 | 86.8% | 56.4% |
| 3788029 | 5.1.3.19 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira | 0.72 | 60.0 | 3.69e-01 | 100.0% | 15.4% |
| 3607725 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.71 | 59.0 | 3.41e-01 | 100.0% | 10.4% |
| 3986842 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 57.0 | 4.66e-01 | 94.7% | 48.6% |
| 3612106 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.71 | 52.0 | 4.15e-01 | 78.9% | 45.3% |
| 3241605 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.70 | 58.0 | 3.47e-01 | 100.0% | 13.2% |
| 4930465 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.70 | 56.0 | 4.95e-01 | 100.0% | 60.0% |
| 5037870 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.69 | 54.0 | 4.41e-01 | 89.5% | 64.0% |
| 5018346 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.68 | 55.0 | 3.26e-01 | 100.0% | 11.4% |
| 5048260 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 56.0 | 3.78e-01 | 100.0% | 25.2% |
| 4961179 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.65 | 47.0 | 4.40e-01 | 78.9% | 64.0% |
| 2387792 | 1205.1.1.0 ↗ | a+b two layers › C-terminal domain of CdiA toxin | 0.65 | 54.0 | 4.46e-01 | 100.0% | 54.7% |
| 3383054 | 221.1.2.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e | 0.65 | 46.0 | 4.70e-01 | 86.8% | 85.7% |
| 3710525 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 49.0 | 3.48e-01 | 100.0% | 24.0% |
| 4961197 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.64 | 49.0 | 4.27e-01 | 94.7% | 51.4% |
| 3518993 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.63 | 49.0 | 5.01e-01 | 89.5% | 100.0% |
| 4936173 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.62 | 50.0 | 3.52e-01 | 92.1% | 92.0% |
| 3613822 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 47.0 | 2.76e-01 | 100.0% | 8.5% |
| 4927544 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 45.0 | 4.60e-01 | 84.2% | 97.1% |
| 5052895 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 44.0 | 4.01e-01 | 84.2% | 60.0% |
| 3738506 | 4325.1.1.4 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DIPSY | 0.58 | 46.0 | 4.63e-01 | 100.0% | 92.5% |
| 3509551 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.58 | 39.0 | 3.20e-01 | 73.7% | 97.6% |
| 3427431 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 40.0 | 4.20e-01 | 76.3% | 96.7% |
| 3651563 | 220.1.1.181 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_ULP | 0.58 | 43.0 | 3.23e-01 | 94.7% | 50.4% |
| 3189994 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.57 | 38.0 | 3.07e-01 | 76.3% | 31.1% |
| 3289183 | 3837.1.1.3 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF7873 | 0.54 | 39.0 | 2.62e-01 | 84.2% | 18.3% |
| 4297843 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 39.0 | 3.42e-01 | 100.0% | 77.5% |
| 5047657 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 41.0 | 3.81e-01 | 97.4% | 72.7% |
| 3923899 | 130.1.1.15 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PADR1_N | 0.53 | 40.0 | 2.91e-01 | 97.4% | 33.6% |
| 2983288 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.25e-01 | 94.7% | 40.4% |
| 4940173 | 375.1.1.9 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom | 0.51 | 41.0 | 3.94e-01 | 92.1% | 91.1% |