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QC4_scaffold_20_prodigal-single.1__X__X__00068
Bact-VirQC4_scaffold_20_prodigal-single.1__X__X__00068
Identity
- Kingdom:
- phage
Quality
44.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 307-393
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q7fB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.65 | 44.0 | 3.04e-01 | 70.1% | 25.9% |
| 3fvzA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.63 | 43.0 | 2.87e-01 | 70.1% | 23.7% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.63 | 39.0 | 4.36e-01 | 70.1% | 79.7% |
| 1kz7C02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 42.0 | 3.65e-01 | 70.1% | 86.1% |
| 2dg1C00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.62 | 43.0 | 2.85e-01 | 71.3% | 24.1% |
| 2ymuA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 41.0 | 2.86e-01 | 70.1% | 23.1% |
| 1r5mA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 42.0 | 2.77e-01 | 73.6% | 18.2% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.58 | 45.0 | 3.75e-01 | 83.9% | 100.0% |
| 4ci8A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 43.0 | 2.93e-01 | 78.2% | 22.4% |
| 3jb9L00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 42.0 | 2.85e-01 | 74.7% | 93.2% |
| 4q66D01 | 6.20.120.50 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 34.0 | 3.58e-01 | 73.6% | 65.8% |
| 3u4yA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 42.0 | 2.86e-01 | 78.2% | 23.5% |
| 1z6nA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 45.0 | 3.66e-01 | 85.1% | 74.1% |
| 4czxA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 38.0 | 2.62e-01 | 70.1% | 20.1% |
| 1pjxA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.56 | 39.0 | 2.68e-01 | 72.4% | 24.8% |
| 4g56D00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 42.0 | 2.87e-01 | 80.5% | 95.4% |
| 2ju5A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 38.0 | 3.33e-01 | 70.1% | 87.1% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 39.0 | 3.40e-01 | 74.7% | 93.6% |
| 5b4wA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 44.0 | 2.82e-01 | 87.4% | 31.3% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 36.0 | 3.40e-01 | 71.3% | 54.6% |
| 4i8qA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 36.0 | 2.48e-01 | 73.6% | 19.9% |
| 2mtzA02 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.54 | 40.0 | 3.72e-01 | 82.8% | 90.8% |
| 2mhdA00 | 2.40.128.370 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 37.0 | 3.46e-01 | 78.2% | 57.3% |
| 5w1eA01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 39.0 | 3.11e-01 | 79.3% | 36.9% |
| 4dapA01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 37.0 | 3.86e-01 | 80.5% | 81.2% |
| 4v19S00 | 3.30.420.80 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 | 0.52 | 36.0 | 3.15e-01 | 73.6% | 45.5% |
| 2bmxB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 42.0 | 3.41e-01 | 89.7% | 61.0% |
| 2ix2A01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.52 | 39.0 | 2.93e-01 | 80.5% | 90.5% |
| 1zxuA00 | 2.40.160.200 | Mainly Beta › Beta Barrel › Porin › LURP1-related | 0.52 | 42.0 | 3.38e-01 | 86.2% | 87.0% |
| 2gx9A00 | 3.30.420.330 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Influenza virus non-structural protein, effector domain | 0.52 | 37.0 | 3.28e-01 | 74.7% | 53.2% |
| 2hh8A00 | 3.30.1810.10 | Alpha Beta › 2-Layer Sandwich › YdfO-like fold › YdfO-like | 0.52 | 35.0 | 3.20e-01 | 71.3% | 82.7% |
| 2r6uA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 29.0 | 2.55e-01 | 73.6% | 39.3% |
| 4gqcA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 41.0 | 3.43e-01 | 89.7% | 64.4% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3259583 | 220.1.1.86 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N | 0.72 | 46.0 | 4.83e-01 | 85.1% | 71.2% |
| 3436556 | 220.1.1.86 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N | 0.71 | 46.0 | 4.92e-01 | 85.1% | 76.0% |
| 4845616 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.68 | 33.0 | 4.62e-01 | 85.1% | 95.5% |
| 3478678 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 44.0 | 4.67e-01 | 85.1% | 80.0% |
| 3376278 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.63 | 43.0 | 2.90e-01 | 70.1% | 24.1% |
| 3251391 | 5.1.4.297 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 | 0.62 | 44.0 | 2.94e-01 | 73.6% | 21.2% |
| 3616213 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.62 | 42.0 | 2.94e-01 | 70.1% | 24.4% |
| 3507339 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 43.0 | 2.90e-01 | 71.3% | 34.7% |
| 3646226 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.61 | 44.0 | 4.54e-01 | 74.7% | 85.0% |
| 3514014 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.61 | 42.0 | 2.89e-01 | 70.1% | 24.0% |
| 3953675 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.61 | 37.0 | 4.21e-01 | 78.2% | 81.5% |
| 3193273 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 47.0 | 2.87e-01 | 81.6% | 18.8% |
| 5068125 | 5.1.4.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 | 0.60 | 42.0 | 2.85e-01 | 71.3% | 22.4% |
| 3960750 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.60 | 40.0 | 3.67e-01 | 70.1% | 59.3% |
| 4262679 | 5.1.4.322 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_IFT122_1st | 0.59 | 40.0 | 2.75e-01 | 70.1% | 20.7% |
| 5056836 | 5.1.3.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylsulfotran_2 | 0.59 | 41.0 | 2.77e-01 | 72.4% | 22.6% |
| 4573580 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.59 | 44.0 | 3.08e-01 | 79.3% | 85.8% |
| 5040649 | 5.1.4.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 | 0.59 | 42.0 | 3.08e-01 | 73.6% | 32.3% |
| 4956008 | 5.1.4.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 | 0.58 | 43.0 | 2.84e-01 | 78.2% | 20.0% |
| 3703426 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 42.0 | 2.83e-01 | 74.7% | 27.2% |
| 3629728 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 41.0 | 3.60e-01 | 74.7% | 80.7% |
| 5074382 | 2485.1.1.15 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredox_DsbH | 0.58 | 45.0 | 3.80e-01 | 82.8% | 84.8% |
| 3994860 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 42.0 | 2.73e-01 | 74.7% | 21.9% |
| 4938162 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 40.0 | 4.01e-01 | 71.3% | 96.7% |
| 5036089 | 3407.1.1.2 ↗ | mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc | 0.58 | 38.0 | 3.38e-01 | 72.4% | 46.4% |
| 3772396 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 47.0 | 3.06e-01 | 87.4% | 78.4% |
| 3264242 | 5.1.4.297 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 | 0.58 | 44.0 | 2.90e-01 | 81.6% | 37.1% |
| 3672647 | 5.1.4.297 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 | 0.57 | 44.0 | 2.76e-01 | 80.5% | 72.9% |
| 3574639 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.57 | 39.0 | 2.75e-01 | 72.4% | 78.6% |
| 3791558 | 5.1.12.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains | 0.56 | 39.0 | 2.64e-01 | 72.4% | 68.9% |
| 3800251 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 39.0 | 4.16e-01 | 71.3% | 88.0% |
| 4959681 | 2485.1.1.4 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA | 0.56 | 41.0 | 3.40e-01 | 78.2% | 80.0% |
| 3771074 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 43.0 | 2.94e-01 | 82.8% | 87.0% |
| 3250522 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 43.0 | 2.50e-01 | 80.5% | 12.9% |
| 5040742 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.55 | 42.0 | 3.27e-01 | 80.5% | 97.8% |
| 3180565 | 2485.1.1.4 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA | 0.55 | 38.0 | 2.85e-01 | 71.3% | 70.7% |
| 3230964 | 5.1.12.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains | 0.54 | 37.0 | 2.60e-01 | 72.4% | 76.1% |
| 5080994 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 43.0 | 2.83e-01 | 83.9% | 78.5% |
| 3378005 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.53 | 37.0 | 2.64e-01 | 73.6% | 60.3% |
| 3716935 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 40.0 | 2.67e-01 | 81.6% | 83.0% |
| 3597535 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 37.0 | 2.93e-01 | 75.9% | 34.2% |
| 2409295 | 3943.1.1.3 ↗ | beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › flgK_1st_1 | 0.51 | 38.0 | 3.79e-01 | 80.5% | 96.8% |
| 3460631 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.50 | 35.0 | 2.96e-01 | 72.4% | 49.7% |
| 4241834 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.50 | 38.0 | 2.65e-01 | 81.6% | 32.8% |
| 4600953 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.50 | 38.0 | 2.64e-01 | 81.6% | 35.7% |
D2
medium
residues 11-248