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QC4_scaffold_20_prodigal-single.1__X__X__00089

Bact-Vir

QC4_scaffold_20_prodigal-single.1__X__X__00089

Identity

Kingdom:
phage

Quality

54.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 58-176
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rbcA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 36.0 2.75e-01 71.4% 35.9%
3safB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 41.0 3.14e-01 85.7% 70.4%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 40.0 3.20e-01 85.7% 72.9%
4k4kA02 2.60.40.2630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.81e-01 80.7% 93.0%
2o8eA01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.51 40.0 4.01e-01 83.2% 100.0%
1vm7B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 38.0 2.85e-01 79.0% 86.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4971943 2008.1.1.77 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C 0.59 36.0 4.00e-01 82.4% 76.8%
3988717 2008.1.1.77 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C 0.57 36.0 3.78e-01 81.5% 69.1%
3838381 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.57 40.0 2.86e-01 72.3% 93.6%
3948544 2008.1.1.77 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C 0.56 38.0 3.70e-01 84.9% 62.3%
3407058 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.56 42.0 3.62e-01 77.3% 67.2%
4003276 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 39.0 3.17e-01 78.2% 39.5%
3822590 2008.1.1.77 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C 0.55 39.0 3.95e-01 82.4% 73.9%
5076987 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.53 39.0 2.84e-01 75.6% 93.7%
1007200 3105.1.1.1 ↗ a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › TPM_phosphatase 0.53 31.0 2.92e-01 79.0% 46.2%
3684167 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 37.0 3.36e-01 73.1% 93.9%
4402942 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 40.0 2.93e-01 82.4% 34.7%
4972588 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.51 40.0 2.96e-01 84.9% 88.3%
4984843 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.51 34.0 3.57e-01 73.9% 76.2%
4936054 2008.1.1.77 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C 0.51 39.0 3.98e-01 95.0% 82.5%
None — 0.50 36.0 2.67e-01 73.1% 71.9%
3347815 101.1.2.271 ↗ alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.50 37.0 3.59e-01 77.3% 74.1%