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QC4_scaffold_20_prodigal-single.1__X__X__00099

Bact-Vir

QC4_scaffold_20_prodigal-single.1__X__X__00099

Identity

Kingdom:
phage

Quality

75.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-98
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fhzA00 3.30.190.30 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › 0.61 48.0 4.74e-01 88.5% 78.3%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.57 43.0 4.16e-01 80.2% 82.9%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.70e-01 88.5% 96.7%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.56 47.0 4.58e-01 95.8% 84.0%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.56 46.0 4.39e-01 95.8% 78.4%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.55 45.0 4.35e-01 95.8% 79.1%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 41.0 3.37e-01 83.3% 84.0%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.53 38.0 3.56e-01 74.0% 93.3%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.53 35.0 4.05e-01 86.5% 100.0%
2faoA01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.52 45.0 3.27e-01 97.9% 72.3%
5mz2I00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.51 43.0 3.92e-01 100.0% 67.6%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.51 39.0 2.87e-01 82.3% 51.4%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 40.0 3.92e-01 87.5% 81.7%
2ipiA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 42.0 3.24e-01 92.7% 55.8%
4dohB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 4.19e-01 100.0% 93.2%
6z3tA01 1.10.3370.10 Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain 0.51 40.0 2.67e-01 84.4% 86.6%
1q9jB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.51 39.0 3.15e-01 82.3% 64.0%
1fnfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 4.12e-01 93.8% 88.3%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.95e-01 99.0% 96.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4304749 304.8.1.81 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P 0.66 55.0 3.99e-01 90.6% 63.5%
3250040 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 3.87e-01 91.7% 56.0%
3781646 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.58 52.0 3.81e-01 100.0% 86.9%
5041801 4.15.1.0 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.57 44.0 4.65e-01 89.6% 94.1%
3208802 3435.1.1.3 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-L 0.57 50.0 3.69e-01 100.0% 48.0%
5012604 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.57 45.0 3.52e-01 91.7% 39.5%
4992755 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.56 46.0 4.74e-01 89.6% 96.7%
3694098 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 45.0 4.23e-01 92.7% 78.3%
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.53 40.0 4.36e-01 86.5% 97.5%
4029036 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 39.0 4.07e-01 78.1% 83.3%
5019905 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.52 44.0 4.28e-01 91.7% 84.8%
3597792 221.7.1.0 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 0.51 44.0 4.25e-01 99.0% 98.2%
4453180 2492.1.1.4 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.51 36.0 2.62e-01 74.0% 34.4%
3176712 6109.1.1.1 ↗ a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › ChAPs 0.50 41.0 3.35e-01 87.5% 62.8%
3593981 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.50 39.0 3.86e-01 87.5% 86.7%