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QC4_scaffold_20_prodigal-single.1__X__X__00120
Bact-VirQC4_scaffold_20_prodigal-single.1__X__X__00120
Identity
- Kingdom:
- phage
Quality
56.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-91
Domain cluster:
rep: HQ332138.1__AGN33737.1__PANG_00016__00016__D36-87
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07833.17 best | Cu_amine_oxidN1 | 46.6 | 4.10e-12 | 85.7% | 42.6% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b5fB00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.57 | 46.0 | 4.02e-01 | 91.1% | 96.6% |
| 1j8uA00 | 1.10.800.10 | Mainly Alpha › Orthogonal Bundle › Phenylalanine Hydroxylase › Aromatic amino acid hydroxylase | 0.55 | 42.0 | 2.76e-01 | 92.9% | 42.7% |
| 5dahA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 43.0 | 3.36e-01 | 98.2% | 81.2% |
| 1yb3A00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 41.0 | 3.03e-01 | 94.6% | 70.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4580534 | 241.3.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › N domain of copper amine oxidase › N domain of copper amine oxidase › Cu_amine_oxidN1 | 0.81 | 67.0 | 5.32e-01 | 96.4% | 46.4% |
| 3780957 | 109.2.1.19 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › C5-epim_C | 0.73 | 60.0 | 3.63e-01 | 100.0% | 14.1% |
| 4032345 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.71 | 51.0 | 4.59e-01 | 83.9% | 55.1% |
| 3496299 | 109.2.1.19 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › C5-epim_C | 0.70 | 56.0 | 3.37e-01 | 100.0% | 13.0% |
| 4992467 | 2488.1.1.11 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SFM1-like | 0.68 | 47.0 | 3.31e-01 | 75.0% | 22.6% |
| 5061109 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 41.0 | 4.08e-01 | 75.0% | 75.0% |
| 5078411 | 7592.1.1.6 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csa3_N | 0.55 | 43.0 | 3.18e-01 | 83.9% | 94.3% |
| 3619171 | 189.1.1.2 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP | 0.55 | 46.0 | 3.06e-01 | 94.6% | 95.2% |
| 4321082 | 389.1.1.103 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF30000 | 0.55 | 38.0 | 4.13e-01 | 75.0% | 100.0% |
| 4934542 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.53 | 42.0 | 3.78e-01 | 100.0% | 61.2% |
| 5049962 | 1144.1.1.1 ↗ | beta sandwiches › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Hydantoinase_B | 0.51 | 43.0 | 2.73e-01 | 100.0% | 52.6% |
| 3595497 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 42.0 | 2.80e-01 | 100.0% | 85.9% |
D2
high
residues 133-243