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REn

Euk-Vir

Tomato_mottle_wrinkle_virus

REn__YP_009091991__Tomato_mottle_wrinkle_virus__1266458

Identity

Accession:
YP_009091991 ↗
Protein ID:
REn
Kingdom:
euk

Quality

89.9 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Repensiviricetes› Geplafuvirales› Geminiviridae› Begomovirus› Tomato_mottle_wrinkle_virus

TaxID: 1266458

Cluster

View cluster (386 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-56_95-114
PDB
Domain cluster: rep: 15.9_kDa__NP_951036__Abutilon_mosaic_virus__10815__D15-32_79-116
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01407.22 best Gemini_AL3 47.3 2.50e-12 70.7% 31.9%
D2 medium residues 57-94_115-132
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01407.22 best Gemini_AL3 48.7 8.80e-13 100.0% 34.4%
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 53.0 4.37e-01 85.7% 100.0%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 49.0 4.18e-01 82.1% 100.0%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 50.0 4.25e-01 87.5% 96.9%
5k9fA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 49.0 4.01e-01 82.1% 94.2%
1y7pB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 48.0 4.24e-01 80.4% 100.0%
5xzqF00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 48.0 3.98e-01 83.9% 98.1%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 48.0 4.04e-01 87.5% 97.2%
2djwA01 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.62 47.0 4.31e-01 82.1% 100.0%
2cg4A02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.60 49.0 4.27e-01 89.3% 94.0%
2efpA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.60 50.0 4.18e-01 92.9% 83.7%
2cyyA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.59 48.0 4.10e-01 92.9% 83.2%
1tz0B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 45.0 3.84e-01 85.7% 93.8%
3rx9A00 2.60.40.4150 Mainly Beta › Sandwich › Immunoglobulin-like › Type VI secretion system, lipoprotein SciN 0.58 49.0 3.77e-01 92.9% 40.0%
2p5vA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.58 46.0 4.08e-01 89.3% 95.2%
2bj3D02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.56 45.0 4.04e-01 89.3% 100.0%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 43.0 3.93e-01 89.3% 97.6%
4a1rC00 2.60.40.4150 Mainly Beta › Sandwich › Immunoglobulin-like › Type VI secretion system, lipoprotein SciN 0.56 46.0 3.52e-01 92.9% 37.2%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.54e-01 82.1% 88.8%
3zhnA00 2.60.40.4150 Mainly Beta › Sandwich › Immunoglobulin-like › Type VI secretion system, lipoprotein SciN 0.55 46.0 3.54e-01 92.9% 39.7%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 41.0 3.45e-01 80.4% 100.0%
4gl6A02 3.10.310.80 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Domain of unknown function (DUF5037), C-terminal subdomain 0.55 46.0 3.48e-01 100.0% 59.1%
3e56A00 6.20.180.10 Special › Other non-globular › Ubiquitin-like (UB roll) › 0.55 43.0 4.04e-01 96.4% 76.0%
4ah6A03 3.30.1360.30 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain 0.54 38.0 2.91e-01 78.6% 75.0%
1yrxC01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.45e-01 87.5% 79.8%
2qycA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 3.54e-01 96.4% 98.0%
2zoeB01 2.170.15.20 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › 0.50 36.0 2.82e-01 78.6% 61.4%
1kvdB00 3.30.44.10 Alpha Beta › 2-Layer Sandwich › Smk Toxin, Beta chain › Smk Toxin, beta chain 0.50 38.0 3.63e-01 92.9% 85.7%
4d53A00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.50 34.0 2.69e-01 71.4% 86.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3615945 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.69 49.0 4.15e-01 75.0% 100.0%
3965806 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.68 53.0 4.46e-01 85.7% 98.9%
3891055 304.163.1.2 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › ACT_13 0.60 44.0 3.83e-01 82.1% 89.5%
430181 11.1.4.18 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › T6SS-SciN 0.60 48.0 3.64e-01 92.9% 35.7%
162374 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.59 46.0 2.95e-01 92.9% 95.5%
3713293 206.1.3.25 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 0.58 43.0 2.63e-01 83.9% 34.8%
1031099 11.1.4.18 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › T6SS-SciN 0.55 46.0 3.54e-01 92.9% 39.7%
4674141 273.1.1.5 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › PF29714 0.55 38.0 3.05e-01 73.2% 66.9%
4020984 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.55 42.0 2.89e-01 82.1% 56.4%
4309279 323.1.1.12 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › TRI-like_N 0.54 41.0 2.91e-01 83.9% 58.4%
3966661 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 44.0 3.38e-01 92.9% 38.8%
4416308 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.53 40.0 2.64e-01 85.7% 33.9%
4244965 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.53 41.0 2.54e-01 85.7% 91.0%
4283825 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.52 41.0 2.92e-01 89.3% 59.5%