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REn
Euk-VirMalvastrum_yellow_mosaic_Jamaica_virus
REn__YP_009508002__Malvastrum_yellow_mosaic_Jamaica_virus__376612
Identity
- Accession:
- YP_009508002 ↗
- Protein ID:
- REn
- Kingdom:
- euk
Quality
78.6
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Repensiviricetes›
Geplafuvirales›
Geminiviridae›
Begomovirus›
Malvastrum_yellow_mosaic_Jamaica_virus
TaxID: 376612
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-109
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oktA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.70 | 50.0 | 4.02e-01 | 97.2% | 38.3% |
| 1tueD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 58.0 | 4.70e-01 | 100.0% | 50.0% |
| 1svmA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 59.0 | 5.20e-01 | 100.0% | 72.5% |
| 3vkgA07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 52.0 | 3.60e-01 | 100.0% | 34.4% |
| 4rshA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.57 | 50.0 | 4.33e-01 | 100.0% | 65.7% |
| 1d8cA01 | 3.20.20.360 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Malate synthase, domain 3 | 0.57 | 51.0 | 3.36e-01 | 100.0% | 43.7% |
| 1gg1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 48.0 | 3.48e-01 | 100.0% | 51.3% |
| 1t57A00 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.55 | 39.0 | 3.32e-01 | 89.7% | 43.2% |
| 6ktqA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 49.0 | 3.64e-01 | 100.0% | 52.7% |
| 2gk3A00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.54 | 48.0 | 3.70e-01 | 100.0% | 73.6% |
| 3vueA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.54 | 47.0 | 3.52e-01 | 98.1% | 80.1% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 47.0 | 3.76e-01 | 100.0% | 62.1% |
| 6y9tB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 46.0 | 3.20e-01 | 100.0% | 40.8% |
| 1qyrA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 45.0 | 3.86e-01 | 100.0% | 78.8% |
| 1bgwA02 | 3.40.50.670 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 42.0 | 3.61e-01 | 88.8% | 78.9% |
| 1uqtA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.51 | 45.0 | 3.53e-01 | 100.0% | 81.1% |
| 1lj8A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 39.0 | 2.93e-01 | 97.2% | 31.7% |
| 2uyyA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 44.0 | 3.83e-01 | 98.1% | 72.2% |
| 1jvnA01 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.50 | 44.0 | 3.41e-01 | 97.2% | 80.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4542391 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.80 | 73.0 | 5.51e-01 | 100.0% | 45.2% |
| 9753 | 2004.1.1.48 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PPV_E1_C | 0.69 | 57.0 | 4.65e-01 | 100.0% | 48.3% |
| 4158189 | 2004.1.1.55 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase | 0.68 | 61.0 | 5.37e-01 | 100.0% | 66.3% |
| 3253892 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.67 | 57.0 | 4.66e-01 | 100.0% | 50.3% |
| 2810781 | 8001.1.1.1 ↗ | alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › PPV_E1_C | 0.67 | 58.0 | 4.57e-01 | 100.0% | 45.7% |
| 2704206 | 2004.1.1.57 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Parvo_NS1 | 0.67 | 61.0 | 4.47e-01 | 100.0% | 38.8% |
| 4955069 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 53.0 | 4.68e-01 | 100.0% | 59.4% |
| 5011495 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 57.0 | 4.62e-01 | 100.0% | 52.0% |
| 4959586 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.63 | 57.0 | 4.22e-01 | 100.0% | 39.1% |
| 3954608 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.63 | 57.0 | 4.28e-01 | 100.0% | 41.9% |
| 4932834 | 2004.1.1.176 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp | 0.63 | 45.0 | 3.68e-01 | 75.7% | 85.4% |
| 4027459 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 53.0 | 4.72e-01 | 100.0% | 65.2% |
| 5081314 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 54.0 | 4.09e-01 | 100.0% | 40.0% |
| 3839782 | 2004.1.1.58 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase | 0.61 | 54.0 | 4.15e-01 | 100.0% | 61.9% |
| 3254493 | 2004.1.1.153 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 | 0.61 | 55.0 | 4.15e-01 | 100.0% | 66.5% |
| 3954129 | 2004.1.1.58 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase | 0.61 | 54.0 | 4.18e-01 | 100.0% | 65.3% |
| 3963614 | 2004.1.1.58 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase | 0.60 | 54.0 | 4.04e-01 | 100.0% | 59.3% |
| 5013281 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 54.0 | 3.99e-01 | 100.0% | 39.6% |
| 3610966 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 51.0 | 3.83e-01 | 100.0% | 47.5% |
| 3283012 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.56 | 50.0 | 3.83e-01 | 100.0% | 71.4% |
| 4968024 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.55 | 48.0 | 3.19e-01 | 100.0% | 39.2% |
| 3799245 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 49.0 | 3.43e-01 | 100.0% | 88.7% |
| 4972727 | 7601.1.1.2 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › DUF362 | 0.53 | 42.0 | 3.15e-01 | 88.8% | 33.2% |
| None | — | 0.52 | 42.0 | 3.58e-01 | 88.8% | 72.1% | |
| 5059219 | 7601.1.1.2 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › DUF362 | 0.52 | 46.0 | 3.45e-01 | 100.0% | 84.3% |
| 5004301 | 2002.1.1.52 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Peptidase_U32 | 0.52 | 45.0 | 3.38e-01 | 100.0% | 62.5% |
| 3971874 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 46.0 | 3.32e-01 | 100.0% | 57.7% |
| 3891554 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.50 | 44.0 | 3.51e-01 | 100.0% | 50.9% |
| 4369840 | 2007.2.1.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_2 | 0.50 | 43.0 | 3.61e-01 | 96.3% | 95.9% |
| 5013005 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.50 | 38.0 | 3.19e-01 | 79.4% | 75.1% |