←Back to structures
RF1
Euk-VirRetroperitoneal_fibromatosis-associated_herpesvirus
RF1__YP_010084364__Retroperitoneal_fibromatosis-associated_herpesvirus__111469
Identity
- Accession:
- YP_010084364 ↗
- Protein ID:
- RF1
- Kingdom:
- euk
Quality
53.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Rhadinovirus›
Retroperitoneal_fibromatosis-associated_herpesvirus
TaxID: 111469
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 26-187
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2y7qA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.79 | 41.0 | 5.52e-01 | 93.2% | 93.3% |
| 3shsA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.78 | 42.0 | 5.72e-01 | 93.2% | 97.7% |
| 5fmvA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 36.0 | 4.87e-01 | 93.8% | 98.8% |
| 3wo4C02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 36.0 | 4.69e-01 | 98.1% | 95.6% |
| 3sd2A01 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 32.0 | 4.48e-01 | 93.8% | 97.4% |
| 2q7nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 32.0 | 4.29e-01 | 95.1% | 92.6% |
| 2covG00 | 2.60.40.2450 | Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-xylanase, CBM31 domain | 0.64 | 34.0 | 4.41e-01 | 98.8% | 93.2% |
| 4il7A00 | 2.60.120.1300 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 29.0 | 3.75e-01 | 96.9% | 96.5% |
| 3ffjA04 | 2.60.40.4040 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 33.0 | 3.70e-01 | 93.8% | 79.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3534374 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.82 | 43.0 | 5.87e-01 | 93.2% | 94.4% |
| 3908741 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.79 | 46.0 | 5.88e-01 | 85.2% | 95.0% |
| 3533488 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.77 | 72.0 | 6.33e-01 | 100.0% | 70.0% |
| 3751614 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.75 | 38.0 | 4.92e-01 | 93.2% | 84.2% |
| 5073924 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 35.0 | 4.60e-01 | 92.6% | 98.8% |
| 3021684 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.64 | 31.0 | 4.36e-01 | 94.4% | 98.6% |
| 5022924 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 31.0 | 4.21e-01 | 93.8% | 92.5% |
| 5073655 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 35.0 | 4.54e-01 | 95.7% | 98.9% |
| 4008396 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 36.0 | 4.46e-01 | 93.2% | 94.7% |
| 3558039 | 11.1.1.946 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2, Ig_3 | 0.56 | 48.0 | 4.46e-01 | 90.7% | 84.0% |
| 3779791 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 44.0 | 3.20e-01 | 92.6% | 35.0% |
| 3556703 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 43.0 | 4.30e-01 | 98.8% | 90.0% |