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RNA-dependant_RNA_polymerase

Euk-Vir

Lake_Sinai_virus_2

RNA-dependant_RNA_polymerase__YP_009408181__Lake_Sinai_virus_2__1041831

Identity

Accession:: YP_009408181 ↗
Protein ID:: RNA-dependant_RNA_polymerase
Kingdom:: euk

Quality

75.4 mean pLDDT

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-100_367-380

PDB

D2 medium residues 101-211_331-366

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009388502__Lake_Sinai_Virus_TO__1983564__D141-286_372-406

D3 medium residues 212-295_381-394

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009333161__Hubei_tombus-like_virus_32__1923280__D105-190

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r7rA05	1.10.357.80	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.59	51.0	4.22e-01	95.9%	84.1%
2l09A01	1.10.8.550	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B	0.56	27.0	3.54e-01	89.8%	86.5%
2zdiB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.53	29.0	2.89e-01	75.5%	48.1%
5ekcF01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.52	41.0	3.03e-01	88.8%	79.2%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
217141	304.48.1.15 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3	0.79	73.0	4.86e-01	100.0%	58.3%
3918122	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.74	67.0	4.43e-01	100.0%	55.9%
3267570	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.72	66.0	4.46e-01	100.0%	50.9%
3258406	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.72	66.0	4.05e-01	100.0%	39.1%
4188583	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.69	63.0	4.11e-01	100.0%	51.3%
4380832	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.69	62.0	4.13e-01	100.0%	54.2%
5029718	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.67	60.0	4.14e-01	100.0%	60.0%
4019374	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.66	58.0	3.89e-01	100.0%	63.2%
4872037	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.65	58.0	4.27e-01	100.0%	69.5%
3680609	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.65	51.0	4.32e-01	85.7%	66.5%
4236458	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.64	57.0	4.02e-01	100.0%	70.6%
3250871	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.59	52.0	4.56e-01	99.0%	78.7%
3651623	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.58	51.0	3.84e-01	98.0%	66.9%
3646867	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.57	51.0	4.50e-01	100.0%	85.5%
3642597	109.4.1.498 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4487	0.56	41.0	2.65e-01	78.6%	88.0%
2644092	3281.1.1.2 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N	0.53	44.0	2.75e-01	95.9%	70.5%
4250019	3281.1.1.4 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,NADH5_C	0.53	44.0	2.75e-01	94.9%	66.9%
4154189	3281.1.1.2 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N	0.51	43.0	2.66e-01	94.9%	66.9%
3633684	2004.1.1.1 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA	0.51	38.0	2.58e-01	78.6%	34.4%
3980111	3281.1.1.2 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N	0.51	43.0	2.70e-01	95.9%	68.2%
4519020	3281.1.1.1 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M	0.50	40.0	2.62e-01	88.8%	69.5%

D4 medium residues 296-330_395-472

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

D5 medium residues 505-622

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1x2nA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.62	27.0	3.69e-01	70.3%	80.0%
1qrvA00	1.10.30.10	Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain	0.61	19.0	2.42e-01	73.7%	43.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3844936	101.1.1.273 ↗	alpha arrays › HTH › HTH › Three-helical HTH › PF26094	0.63	32.0	3.94e-01	73.7%	77.3%