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RNA-dependent_RNA_polymerase_3D
Euk-VirDromedary_camel_enterovirus_19CC
RNA-dependent_RNA_polymerase_3D__YP_009508973__Dromedary_camel_enterovirus_19CC__1637527
Identity
- Accession:
- YP_009508973 ↗
- Protein ID:
- RNA-dependent_RNA_polymerase_3D
- Kingdom:
- euk
Quality
96.7
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Picornavirales›
Picornaviridae›
Enterovirus›
Dromedary_camel_enterovirus_19CC
TaxID: 1637527
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 377-460
D2
medium
residues 1-33_189-201_238-289
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4liqE01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 23.0 | 2.50e-01 | 95.9% | 48.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1173784 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.98 | 95.0 | 6.10e-01 | 100.0% | 78.6% |
| None | — | 0.95 | 92.0 | 5.93e-01 | 100.0% | 79.0% | |
| 5367 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.86 | 81.0 | 5.27e-01 | 100.0% | 79.1% |
| 4946834 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 24.0 | 2.83e-01 | 81.6% | 50.0% |
| 4965344 | 328.9.1.4 ↗ | a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › DUF5779 | 0.51 | 26.0 | 2.98e-01 | 100.0% | 64.0% |
D3
medium
residues 34-68_92-188
Domain cluster:
rep: 3D__YP_009179377__sicinivirus_A1__2773315__D75-149_180-201
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 39.4 | 4.40e-10 | 97.0% | 22.0% |
D4
medium
residues 69-91_202-237_290-376
Domain cluster:
rep: RNA_dependent_RNA_polymerase__YP_529897__Newbury_agent_1__331642__D58-79_192-241_281-399
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 32.9 | 4.20e-08 | 60.3% | 20.2% |