RNA-dependent_RNA_polymerase_NS5B

Euk-Vir

Hepacivirus_I

RNA-dependent_RNA_polymerase_NS5B__YP_009679033__Hepacivirus_I__2008768

Identity

88.9 mean pLDDT

Orthornavirae› Kitrinoviricota› Flasuviricetes› Amarillovirales› Flaviviridae› Hepacivirus› Hepacivirus_rhabdomysis

TaxID: 2008768

View cluster (450 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 385-554

PDB

Domain cluster: rep: NS5B_RNA-dependent_RNA_polymerase__YP_009272656__Hepatitis_C_virus_genotype_5__33746__D391-472_498-585

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	43.0	3.70e-11	75.9%	23.7%

D2 medium residues 1-78

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ux5A01	6.10.30.50	Special › Helix non-globular › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 ›	0.51	27.0	2.95e-01	94.9%	60.0%

D3 medium residues 79-191_222-284

PDB

Domain cluster: rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	48.7	7.00e-13	36.4%	12.6%

D4 medium residues 192-221_358-384

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase_NS5B__YP_009664172__Hepacivirus_M__2008772__D188-219_360-384

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	30.0	3.20e-07	56.1%	6.2%

D5 medium residues 285-357

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase_NS5B__YP_009679023__Hepacivirus_L__2008771__D289-359

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	66.8	2.40e-18	100.0%	14.0%