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RNA-dependent_RNA_polymerase_NS5
Euk-VirLammi_virus
RNA-dependent_RNA_polymerase_NS5__YP_009268596__Lammi_virus__649187
Identity
- Accession:
- YP_009268596 ↗
- Protein ID:
- RNA-dependent_RNA_polymerase_NS5
- Kingdom:
- euk
Quality
85.0
mean pLDDT
Taxonomy
TaxID: 649187
Cluster
View cluster (51 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-256
Domain cluster:
rep: IMGVR_UViG_3300009616_000257-3300009616-Ga0116111_100275611__D486-632
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01728.26 best | FtsJ | 76.2 | 4.50e-21 | 69.9% | 97.8% |
D2
high
residues 715-901
Domain cluster:
rep: RNA-dependent_RNA_polymerase_NS5__YP_009268628__Hanko_virus__1125677__D698-878
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20483.4 best | Flavi_NS5_thumb | 225.7 | 4.30e-67 | 84.5% | 96.3% |
D3
medium
residues 269-362_460-477_581-606
Domain cluster:
rep: NS5-like_protein__YP_009179403__Wuhan_flea_virus__1746071__D315-356_368-395_444-456_471-503_597-617
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00972.26 best | Flavi_NS5 | 139.0 | 2.60e-40 | 68.8% | 20.4% |
| PF00972.26 | Flavi_NS5 | 30.9 | 1.70e-07 | 18.8% | 5.8% |
D4
medium
residues 363-406_494-549_607-712
Domain cluster:
rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00972.26 best | Flavi_NS5 | 124.0 | 9.10e-36 | 48.5% | 21.5% |
| PF00972.26 | Flavi_NS5 | 93.4 | 1.70e-26 | 28.2% | 12.4% |
| PF00972.26 | Flavi_NS5 | 42.8 | 3.90e-11 | 22.3% | 9.8% |
D5
medium
residues 407-459_478-493_550-580
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00972.26 best | Flavi_NS5 | 66.8 | 2.00e-18 | 54.0% | 11.8% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1279063 | 304.48.1.13 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5 | 0.93 | 89.0 | 5.57e-01 | 100.0% | 39.8% |
| 3925476 | 109.4.1.1134 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_INTS8_3 | 0.55 | 46.0 | 3.09e-01 | 92.0% | 36.8% |
| 3176040 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.51 | 43.0 | 3.07e-01 | 93.0% | 41.2% |