RNA-dependent_RNA_polymerase_NS5

Euk-Vir

Nakiwogo_virus

RNA-dependent_RNA_polymerase_NS5__YP_009268612__Nakiwogo_virus__667516

Identity

85.3 mean pLDDT

Orthornavirae› Kitrinoviricota› Flasuviricetes› Amarillovirales› Flaviviridae› Nakiwogo_virus

TaxID: 667516

View cluster (51 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-241

PDB

Domain cluster: rep: IMGVR_UViG_3300009616_000257-3300009616-Ga0116111_100275611__D486-632

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01728.26 best	FtsJ	81.7	8.80e-23	86.6%	99.5%

D2 high residues 697-876

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase_NS5__YP_009268628__Hanko_virus__1125677__D698-878

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF20483.4 best	Flavi_NS5_thumb	185.8	8.00e-55	87.8%	95.7%

D3 medium residues 336-400

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00972.26 best	Flavi_NS5	33.0	3.60e-08	100.0%	13.8%

D4 medium residues 468-494_526-579_598-632

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00972.26 best	Flavi_NS5	38.4	8.50e-10	80.2%	21.9%
PF00972.26	Flavi_NS5	37.1	2.00e-09	24.1%	5.5%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8d7hD01	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.55	40.0	3.56e-01	75.9%	86.1%
5hdiA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.54	46.0	3.23e-01	94.0%	77.1%
2ivxB01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.53	32.0	3.07e-01	74.1%	50.7%

D5 medium residues 495-525_633-695

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase_NS5__YP_009259365__Quang_Binh_virus__643132__D492-530_608-683

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00972.26 best	Flavi_NS5	36.7	2.80e-09	61.7%	11.8%