RNA-dependent_RNA_polymerase

Euk-Vir

Citrus_leaf_rugose_virus

RNA-dependent_RNA_polymerase__NP_613281__Citrus_leaf_rugose_virus__37126

Identity

66.4 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Bromoviridae› Ilarvirus› Citrus_leaf_rugose_virus

TaxID: 37126

View cluster (23 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-66

PDB

D2 medium residues 184-234_395-447_519-682

PDB

Domain cluster: rep: hypothetical_protein__YP_009337242__Hubei_virga-like_virus_11__1923326__D570-604_623-662_810-820_945-1065

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	125.5	3.70e-36	56.7%	31.4%
PF00978.27	RdRP_2	52.0	7.80e-14	27.6%	12.7%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3nzpB03	1.20.58.930	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.64	21.0	3.74e-01	93.7%	94.9%
3mkcA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.59	20.0	2.69e-01	95.1%	51.4%
2rn7A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	14.0	2.79e-01	86.2%	86.4%
2jbwA01	1.20.1440.110	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase	0.52	22.0	3.30e-01	92.9%	93.2%
1tjcA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	18.0	2.98e-01	87.7%	88.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5002351	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.57	47.0	4.16e-01	85.1%	76.0%

D3 medium residues 235-289_320-350_365-394

PDB

Domain cluster: rep: putative_2a_protein__NP_619771__Pelargonium_zonate_spot_virus__116056__D201-297_358-380

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	56.2	4.10e-15	57.8%	13.4%

D4 medium residues 351-364_448-518

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337432__Changjiang_tombus-like_virus_5__1922819__D23-82_137-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	99.7	2.60e-28	84.7%	16.1%