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RNA-dependent_RNA_polymerase
Euk-VirBeet_necrotic_yellow_vein_virus
RNA-dependent_RNA_polymerase__NP_705701__Beet_necrotic_yellow_vein_virus__31721
Identity
- Accession:
- NP_705701 ↗
- Protein ID:
- RNA-dependent_RNA_polymerase
- Kingdom:
- euk
Quality
69.4
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Hepelivirales›
Benyviridae›
Benyvirus›
Beet_necrotic_yellow_vein_virus
TaxID: 31721
Cluster
View cluster (23 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 431-510
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x2nA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 43.0 | 4.91e-01 | 86.3% | 80.0% |
| 2ia0A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 35.0 | 4.21e-01 | 86.3% | 74.1% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.68 | 43.0 | 4.33e-01 | 100.0% | 64.6% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 39.0 | 4.23e-01 | 86.3% | 71.2% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 36.0 | 3.86e-01 | 81.2% | 63.9% |
| 1owaA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 51.0 | 4.73e-01 | 96.2% | 90.6% |
| 1ku3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 36.0 | 4.17e-01 | 78.8% | 80.3% |
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 35.0 | 3.57e-01 | 81.2% | 58.7% |
| 1lvaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 34.0 | 3.85e-01 | 83.7% | 72.6% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 45.0 | 4.39e-01 | 81.2% | 88.9% |
| 4gvpA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 45.0 | 3.34e-01 | 81.2% | 66.0% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.58 | 40.0 | 4.01e-01 | 73.8% | 87.2% |
| 3gg7A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.57 | 49.0 | 3.42e-01 | 100.0% | 30.0% |
| 4edgA03 | 1.20.50.20 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle | 0.57 | 39.0 | 4.41e-01 | 87.5% | 96.7% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 47.0 | 4.40e-01 | 96.2% | 88.7% |
| 5f64A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.93e-01 | 71.2% | 77.3% |
| 7pzaA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 3.68e-01 | 86.3% | 66.3% |
| 4dwpA01 | 6.10.140.1780 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 43.0 | 4.15e-01 | 97.5% | 76.1% |
| 2lsgA00 | 1.20.58.1280 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain | 0.52 | 43.0 | 4.06e-01 | 100.0% | 75.3% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 4.06e-01 | 93.8% | 92.2% |
| 1xwyA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.52 | 46.0 | 3.24e-01 | 100.0% | 31.9% |
| 2qlzA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 34.0 | 3.66e-01 | 88.7% | 87.3% |
| 2cvzA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 42.0 | 3.67e-01 | 97.5% | 90.2% |
| 2ef8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 38.0 | 3.80e-01 | 100.0% | 77.4% |
| 1ks9A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 43.0 | 3.77e-01 | 95.0% | 97.6% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.50 | 45.0 | 3.81e-01 | 100.0% | 71.4% |
| 2oi8A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 42.0 | 3.26e-01 | 98.8% | 76.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965615 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 37.0 | 4.73e-01 | 91.3% | 74.0% |
| 4955389 | 101.1.1.542 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF790 | 0.73 | 39.0 | 4.69e-01 | 98.8% | 78.2% |
| 3266463 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 43.0 | 5.17e-01 | 85.0% | 89.1% |
| 3979215 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 44.0 | 5.27e-01 | 85.0% | 94.5% |
| 3398490 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.68 | 44.0 | 4.85e-01 | 87.5% | 81.5% |
| 3700101 | 3009.1.1.0 ↗ | alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like | 0.67 | 43.0 | 4.39e-01 | 87.5% | 66.3% |
| 4520850 | 101.1.1.251 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB | 0.67 | 37.0 | 3.97e-01 | 93.8% | 62.9% |
| 3484031 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.66 | 57.0 | 4.83e-01 | 96.2% | 72.6% |
| 3483996 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.65 | 56.0 | 5.06e-01 | 96.2% | 89.1% |
| 5018159 | 101.29.1.1 ↗ | alpha arrays › HTH › helical bundles in heme iron utilization protein-like › helical bundles in heme iron utilization protein-like › DUF790 | 0.64 | 38.0 | 4.73e-01 | 78.8% | 96.0% |
| 3406145 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.64 | 43.0 | 4.76e-01 | 86.3% | 86.2% |
| 3905142 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.63 | 39.0 | 4.62e-01 | 80.0% | 90.9% |
| 4992012 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 41.0 | 4.77e-01 | 85.0% | 90.0% |
| 3807 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.62 | 53.0 | 4.33e-01 | 96.2% | 62.8% |
| 3904076 | 604.1.1.95 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KIAA1755_C | 0.61 | 52.0 | 4.97e-01 | 97.5% | 93.7% |
| 3570731 | 4973.1.1.6 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › UBN_AB | 0.57 | 50.0 | 4.85e-01 | 97.5% | 94.4% |
| 4048495 | 3236.1.1.5 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_antiport_1 | 0.56 | 44.0 | 2.86e-01 | 85.0% | 69.2% |
| 4093017 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.55 | 44.0 | 4.51e-01 | 92.5% | 92.0% |
| 4347813 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.55 | 42.0 | 4.59e-01 | 95.0% | 100.0% |
| 4046675 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.55 | 43.0 | 4.30e-01 | 92.5% | 81.2% |
| 3534849 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.55 | 49.0 | 4.32e-01 | 100.0% | 80.0% |
| 3215046 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 47.0 | 4.00e-01 | 100.0% | 76.3% |
| 3754987 | 101.1.1.208 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Rrn7_cyclin_C | 0.54 | 49.0 | 3.86e-01 | 100.0% | 86.1% |
| 5045405 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.53 | 44.0 | 3.61e-01 | 96.2% | 73.9% |
| 3575981 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.53 | 44.0 | 4.43e-01 | 87.5% | 95.0% |
| 4536670 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.53 | 46.0 | 4.00e-01 | 100.0% | 76.9% |
| 3573599 | 7579.1.1.21 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Ndr | 0.53 | 44.0 | 3.01e-01 | 88.7% | 78.5% |
| 3915619 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.52 | 45.0 | 3.28e-01 | 100.0% | 77.6% |
| 56859 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.52 | 35.0 | 3.51e-01 | 81.2% | 65.1% |
| 3519655 | 101.1.10.33 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C | 0.51 | 46.0 | 3.71e-01 | 100.0% | 93.5% |
D2
medium
residues 1-53
D3
medium
residues 107-121_523-568
D4
medium
residues 122-146_201-242_340-355
D5
medium
residues 147-200_243-267_306-339_356-376
Domain cluster:
rep: 2a_protein__NP_620043__Olive_latent_virus_2__33773__D378-441_457-482_515-591
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i53A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 35.0 | 3.78e-01 | 72.4% | 71.2% |
| 2zy9A03 | 1.10.357.20 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain | 0.51 | 35.0 | 3.25e-01 | 70.9% | 64.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3608391 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.52 | 37.0 | 3.63e-01 | 73.1% | 71.0% |
| 4620864 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.51 | 35.0 | 2.84e-01 | 71.6% | 92.2% |
| 3868390 | 3670.1.1.1 ↗ | alpha complex topology › NCD2 domain › NCD2 domain › NCD2 domain › NCD2 | 0.51 | 43.0 | 4.36e-01 | 100.0% | 91.0% |
D6
medium
residues 268-305_377-425
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qv6A01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.69 | 48.0 | 4.20e-01 | 71.3% | 79.7% |
| 6qwtA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.68 | 60.0 | 5.14e-01 | 100.0% | 83.7% |
| 4zmuA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.67 | 60.0 | 4.95e-01 | 100.0% | 87.7% |
| 2rilA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 46.0 | 4.53e-01 | 72.4% | 94.7% |
| 3ezuA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.66 | 58.0 | 4.91e-01 | 100.0% | 88.5% |
| 3breA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.65 | 58.0 | 4.56e-01 | 100.0% | 80.1% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 45.0 | 4.70e-01 | 72.4% | 98.8% |
| 4pwuC00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.65 | 45.0 | 4.74e-01 | 72.4% | 97.4% |
| 1o51A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 45.0 | 4.54e-01 | 72.4% | 95.5% |
| 3dcaA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 45.0 | 3.93e-01 | 72.4% | 83.1% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 49.0 | 4.54e-01 | 85.1% | 84.5% |
| 4urgA00 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.63 | 56.0 | 4.72e-01 | 100.0% | 90.7% |
| 6pwjA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.63 | 56.0 | 4.58e-01 | 100.0% | 74.5% |
| 3mtkA00 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.63 | 55.0 | 4.51e-01 | 98.9% | 81.6% |
| 4iobA00 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.63 | 55.0 | 4.54e-01 | 100.0% | 85.1% |
| 2qa4G01 | 3.30.70.1730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain | 0.62 | 52.0 | 4.77e-01 | 92.0% | 94.8% |
| 2nyiA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 42.0 | 4.39e-01 | 71.3% | 97.5% |
| 1x31C02 | 3.30.70.1520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Heterotetrameric sarcosine oxidase | 0.60 | 41.0 | 4.29e-01 | 71.3% | 100.0% |
| 1y7pB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 40.0 | 4.20e-01 | 71.3% | 100.0% |
| 3onqA02 | 3.30.70.2730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 42.0 | 4.33e-01 | 75.9% | 98.8% |
| 3tfiA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.58 | 45.0 | 3.04e-01 | 86.2% | 39.8% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.57 | 39.0 | 3.89e-01 | 71.3% | 89.4% |
| 3r8yA01 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.57 | 37.0 | 4.11e-01 | 71.3% | 86.4% |
| 3aqoA01 | 3.30.70.3400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 38.0 | 3.97e-01 | 70.1% | 97.5% |
| 2zahA02 | 2.60.40.4030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 38.0 | 3.42e-01 | 70.1% | 57.8% |
| 2gv9B04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.56 | 50.0 | 3.87e-01 | 100.0% | 94.4% |
| 2cwrA00 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 38.0 | 3.75e-01 | 72.4% | 69.1% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 37.0 | 3.81e-01 | 70.1% | 95.1% |
| 2gmlA02 | 3.30.70.1560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif | 0.54 | 37.0 | 3.97e-01 | 70.1% | 100.0% |
| 2qz8A02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.54 | 39.0 | 4.05e-01 | 75.9% | 100.0% |
| 1e5bA00 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 36.0 | 3.66e-01 | 71.3% | 69.0% |
| 1vioA03 | 3.30.70.1560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif | 0.54 | 37.0 | 3.82e-01 | 71.3% | 93.9% |
| 2hiyA02 | 3.30.70.1260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › bacterial protein sp0830 like | 0.53 | 42.0 | 4.14e-01 | 86.2% | 91.3% |
| 1kskA02 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.53 | 37.0 | 3.00e-01 | 72.4% | 49.7% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 3.93e-01 | 72.4% | 93.2% |
| 3bv8A00 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.52 | 36.0 | 3.67e-01 | 73.6% | 74.1% |
| 3pucA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.45e-01 | 71.3% | 76.5% |
| 2rqkA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 40.0 | 3.82e-01 | 87.4% | 86.2% |
| 1hxmB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 35.0 | 3.30e-01 | 70.1% | 75.2% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3280213 | 304.48.1.48 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 | 0.67 | 58.0 | 4.67e-01 | 96.6% | 76.0% |
| 2068914 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.67 | 46.0 | 3.83e-01 | 72.4% | 59.5% |
| 4326469 | 304.44.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › PriA_C | 0.65 | 46.0 | 4.68e-01 | 73.6% | 100.0% |
| 4950570 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.65 | 46.0 | 5.13e-01 | 73.6% | 98.5% |
| 5023038 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.65 | 45.0 | 4.66e-01 | 71.3% | 92.5% |
| 3942347 | 304.48.1.14 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF | 0.64 | 56.0 | 4.63e-01 | 98.9% | 79.4% |
| 2066826 | 304.107.1.0 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain | 0.64 | 43.0 | 4.28e-01 | 70.1% | 93.5% |
| 5024188 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.63 | 44.0 | 4.02e-01 | 72.4% | 94.8% |
| 5047332 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.63 | 43.0 | 4.44e-01 | 70.1% | 83.7% |
| 162851 | 304.8.1.9 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 | 0.62 | 42.0 | 4.39e-01 | 71.3% | 97.5% |
| 4064506 | 304.147.1.1 ↗ | a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain › DapH_N | 0.59 | 38.0 | 4.42e-01 | 72.4% | 93.3% |
| 4280381 | 304.147.1.1 ↗ | a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain › DapH_N | 0.58 | 37.0 | 4.37e-01 | 71.3% | 95.0% |
| 3966925 | 304.107.1.2 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › SoxG | 0.58 | 46.0 | 3.58e-01 | 86.2% | 71.8% |
| 4598614 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.58 | 41.0 | 3.69e-01 | 73.6% | 78.3% |
| 5004481 | 304.11.1.16 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › DUF2110_C | 0.58 | 40.0 | 4.15e-01 | 71.3% | 87.3% |
| 3665347 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.57 | 39.0 | 3.73e-01 | 71.3% | 92.4% |
| 4150515 | 11.2.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_SHIP1-2_2nd | 0.56 | 40.0 | 3.47e-01 | 75.9% | 89.0% |
| 3598569 | 10.15.1.1 ↗ | beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like › DUF1935 | 0.56 | 35.0 | 3.25e-01 | 72.4% | 47.8% |
| 3790424 | 2004.1.1.303 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC2_membrane_7 | 0.55 | 39.0 | 2.59e-01 | 100.0% | 19.1% |
| 2512867 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.54 | 38.0 | 3.56e-01 | 73.6% | 77.4% |
| 5026237 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 37.0 | 3.78e-01 | 71.3% | 98.8% |
| 3589327 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 39.0 | 4.04e-01 | 77.0% | 100.0% |
| 4113036 | 11.1.1.1109 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_2 | 0.53 | 37.0 | 3.56e-01 | 72.4% | 67.0% |
| 4433786 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.53 | 41.0 | 4.16e-01 | 98.9% | 84.7% |
| 3959242 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 3.23e-01 | 73.6% | 57.8% |
| 197838 | 304.147.1.1 ↗ | a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain › DapH_N | 0.52 | 36.0 | 3.67e-01 | 73.6% | 74.1% |
| 4965698 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.52 | 37.0 | 3.86e-01 | 77.0% | 90.0% |
| 4073486 | 304.147.1.1 ↗ | a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain › DapH_N | 0.51 | 34.0 | 3.43e-01 | 72.4% | 67.8% |
| 3282503 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.51 | 40.0 | 3.03e-01 | 90.8% | 62.4% |
| 3690144 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 36.0 | 3.29e-01 | 73.6% | 67.0% |
| 3602746 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 34.0 | 3.58e-01 | 71.3% | 100.0% |
| 3583232 | 864.1.1.3 ↗ | a+b two layers › DLC › DLC › DLC › Ground-like | 0.50 | 34.0 | 3.69e-01 | 70.1% | 97.3% |
| 4439117 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.50 | 37.0 | 3.26e-01 | 77.0% | 84.4% |
| 3614460 | 10.15.1.1 ↗ | beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like › DUF1935 | 0.50 | 34.0 | 3.03e-01 | 72.4% | 50.0% |