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RNA-dependent_RNA_polymerase

Euk-Vir

Subterranean_clover_mottle_virus

RNA-dependent_RNA_polymerase__NP_736581__Subterranean_clover_mottle_virus__12472

Identity

Accession:: NP_736581 ↗
Protein ID:: RNA-dependent_RNA_polymerase
Kingdom:: euk

Quality

83.3 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Sobelivirales› Solemoviridae› Sobemovirus› Subterranean_clover_mottle_virus

TaxID: 12472

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-33_54-67_131-212

PDB

Domain cluster: rep: uncovered_polypeptide_polyprotein_P2ab__YP_003896039_397-980__Velvet_tobacco_mottle_virus__12473__D119-207

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	22.2	8.80e-05	94.1%	17.6%

D2 medium residues 34-53_68-130_213-261_308-367

PDB

Domain cluster: rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	48.5	9.50e-13	36.5%	12.7%
PF02123.22	RdRP_4	30.2	3.30e-07	32.8%	17.0%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1173784	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.82	75.0	5.81e-01	94.3%	78.6%
5367	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.81	74.0	5.73e-01	94.3%	79.1%
2541763	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.81	74.0	5.74e-01	94.3%	78.9%
1279063	304.48.1.13 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5	0.81	77.0	5.75e-01	100.0%	73.0%
None	—		0.81	73.0	5.74e-01	94.3%	79.0%
1875037	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.80	76.0	5.87e-01	99.0%	78.2%
4875416	304.48.1.13 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5	0.75	65.0	5.00e-01	89.6%	66.1%
4859811	304.48.1.7 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flu_PB1	0.75	61.0	4.58e-01	84.9%	78.5%
217141	304.48.1.15 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3	0.74	66.0	5.30e-01	94.8%	75.6%
3258406	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.67	57.0	4.00e-01	89.1%	49.4%
3655168	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.67	51.0	3.93e-01	78.6%	61.5%
3676014	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.66	51.0	3.58e-01	80.2%	45.2%
3899435	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.66	56.0	4.21e-01	89.6%	63.6%

D3 medium residues 262-307_368-448

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	81.5	9.30e-23	67.7%	18.3%