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RNA-dependent_RNA_polymerase
Euk-VirArmigeres_subalbatus_virus_SaX06-AK20
RNA-dependent_RNA_polymerase__YP_003934934__Armigeres_subalbatus_virus_SaX06-AK20__556524
Identity
- Accession:
- YP_003934934 ↗
- Protein ID:
- RNA-dependent_RNA_polymerase
- Kingdom:
- euk
Quality
89.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-98
D2
medium
residues 99-120_147-163_179-251_284-355
D3
medium
residues 252-283_356-440
Domain cluster:
rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325
D4
medium
residues 441-522
Domain cluster:
rep: hypothetical_protein_2__YP_009333270__Wenzhou_toti-like_virus_1__1923680__D689-754
D5
medium
residues 523-603
Domain cluster:
representative
D6
medium
residues 604-635_700-761
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2irmA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.61 | 45.0 | 3.11e-01 | 78.7% | 39.5% |
| 1b10A00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.58 | 45.0 | 4.38e-01 | 96.8% | 75.0% |
| 4aidA02 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.55 | 44.0 | 4.64e-01 | 100.0% | 100.0% |
| 1fafA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.53 | 36.0 | 3.90e-01 | 93.6% | 82.3% |
| 5llyA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 42.0 | 3.34e-01 | 90.4% | 97.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4520363 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.57 | 44.0 | 4.49e-01 | 98.9% | 86.7% |
| 4667970 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.56 | 48.0 | 4.89e-01 | 97.9% | 94.4% |
| 4049391 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.56 | 46.0 | 4.61e-01 | 100.0% | 87.4% |
| 4250716 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.56 | 45.0 | 4.58e-01 | 100.0% | 87.4% |
| 4442882 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.56 | 45.0 | 4.63e-01 | 98.9% | 91.1% |
| 4123602 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.56 | 44.0 | 4.53e-01 | 98.9% | 88.9% |
| 4180109 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.55 | 42.0 | 4.33e-01 | 98.9% | 86.7% |
| 4431360 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.55 | 45.0 | 4.50e-01 | 98.9% | 87.4% |
| 3496487 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 43.0 | 3.97e-01 | 94.7% | 66.7% |
| 996952 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.52 | 34.0 | 3.64e-01 | 93.6% | 74.1% |
| 3600060 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.52 | 36.0 | 3.86e-01 | 91.5% | 82.5% |
| 3403623 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.51 | 40.0 | 3.10e-01 | 83.0% | 73.0% |
D7
medium
residues 636-699
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fzlA01 | 1.10.150.790 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.58 | 50.0 | 4.53e-01 | 95.3% | 71.3% |
| 3jr7A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.56 | 48.0 | 3.97e-01 | 100.0% | 52.5% |
| 1v9mA02 | 1.20.1690.10 | Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain | 0.55 | 46.0 | 4.06e-01 | 100.0% | 85.1% |
| 2cu2A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 44.0 | 2.84e-01 | 93.8% | 44.2% |
| 4jndA01 | 1.10.1740.220 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.52 | 43.0 | 3.59e-01 | 100.0% | 95.4% |
| 2uvfB02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.51 | 46.0 | 2.74e-01 | 100.0% | 14.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5043409 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.64 | 40.0 | 4.58e-01 | 82.8% | 88.9% |
| 3965663 | 131.2.1.2 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_arg_C,PolyA_pol_RNAbd | 0.53 | 43.0 | 2.94e-01 | 93.8% | 48.8% |