RNA-dependent_RNA_polymerase

Euk-Vir

Fig_cryptic_virus

RNA-dependent_RNA_polymerase__YP_004429258__Fig_cryptic_virus__882768

Identity

92.0 mean pLDDT

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-18_77-212_251-308

PDB

Domain cluster: rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	29.6	4.20e-07	60.1%	22.9%

D2 medium residues 27-76_397-472

PDB

Domain cluster: rep: RdRp__YP_009329867__Xinzhou_partiti-like_virus_1__1923776__D22-101_376-450

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4uz0A00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.64	32.0	3.78e-01	79.4%	67.8%
7y4rB01	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.54	37.0	3.96e-01	91.3%	82.1%
4lzgA01	1.10.150.110	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like	0.52	30.0	3.38e-01	81.0%	73.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3427404	3930.1.1.10 ↗	alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › DUF5587	0.52	45.0	3.43e-01	92.9%	93.8%
4357096	601.3.1.6 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Mitofilin	0.52	38.0	3.39e-01	86.5%	52.4%
4937279	2006.1.4.2 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN	0.50	24.0	2.84e-01	87.3%	63.5%

D3 medium residues 213-250_309-396

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	40.9	1.60e-10	70.6%	21.1%