RNA-dependent_RNA_polymerase

Euk-Vir

Ustilaginoidea_virens_partitivirus_2

RNA-dependent_RNA_polymerase__YP_008327312__Ustilaginoidea_virens_partitivirus_2__1415665

Identity

76.1 mean pLDDT

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Ustilaginoidea_virens_partitivirus_2

TaxID: 1415665

View cluster (450 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 54-77_238-262_348-498

PDB

Domain cluster: rep: RdRp__YP_009329867__Xinzhou_partiti-like_virus_1__1923776__D22-101_376-450

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5056142	304.4.1.0 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel	0.57	28.0	4.01e-01	83.0%	100.0%
3408005	2004.1.1.5 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran	0.53	41.0	2.95e-01	81.0%	35.7%
5045299	304.4.1.0 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel	0.52	30.0	3.62e-01	72.0%	84.6%

D2 medium residues 78-124_145-214_322-347

PDB

Domain cluster: rep: RdRp__YP_009337885__Hubei_tetragnatha_maxillosa_virus_8__1923250__D61-84_149-215_309-325

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hstB02	2.30.120.10	Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region	0.51	21.0	3.01e-01	88.1%	80.9%

D3 medium residues 125-144_215-237_263-321

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__NP_116716__Discula_destructiva_virus_1__148880__D115-144_283-336_348-359

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7e5aB02	1.20.1000.10	Mainly Alpha › Up-down Bundle › Signaling Protein - Interferon-induced Guanylate-binding Protein 1; Chain A, domain 1 › Guanylate-binding protein, C-terminal domain	0.62	42.0	3.62e-01	97.1%	43.9%
1akhB00	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.58	31.0	3.49e-01	95.1%	66.7%
1fnnB03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.56	33.0	3.38e-01	94.1%	58.3%
7jgsG02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	32.0	3.28e-01	94.1%	61.2%
6lumD01	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.52	36.0	3.43e-01	72.5%	74.4%
2mc3A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	31.0	3.17e-01	93.1%	58.3%
4fhdA02	3.80.30.30	Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme ›	0.50	36.0	2.84e-01	76.5%	60.4%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3741150	101.1.2.281 ↗	alpha arrays › HTH › HTH › winged helix domain › Tfb2	0.59	26.0	2.98e-01	93.1%	52.5%
4230066	101.1.2.27 ↗	alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind	0.57	31.0	3.24e-01	92.2%	55.6%
4471921	206.1.1.11 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH	0.55	44.0	3.32e-01	88.2%	74.6%
5023037	101.1.2.92 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_11	0.54	27.0	2.93e-01	92.2%	52.9%