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RNA-dependent_RNA_polymerase

Euk-Vir

Wallal_virus

RNA-dependent_RNA_polymerase__YP_008658416__Wallal_virus__40061

Identity

Accession:: YP_008658416 ↗
Protein ID:: RNA-dependent_RNA_polymerase
Kingdom:: euk

Quality

87.5 mean pLDDT

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 660-719

PDB

Domain cluster: rep: VP1_protein__YP_009507680__Corriparta_virus__40053__D646-703

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	64.3	6.20e-18	100.0%	4.6%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1xubA02	3.10.310.10	Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1	0.54	43.0	3.31e-01	91.7%	80.4%
5d79B01	3.30.43.10	Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	0.54	41.0	3.69e-01	88.3%	100.0%
4alzA03	3.30.70.1770	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	38.0	3.84e-01	85.0%	93.8%

D2 medium residues 29-71_886-921

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	33.5	1.30e-08	57.0%	3.3%
PF05788.19	Orbi_VP1	47.0	1.00e-12	45.6%	2.8%

D3 medium residues 72-140

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	68.3	3.80e-19	100.0%	5.2%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3kzwA02	3.40.630.10	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases	0.50	38.0	2.50e-01	82.6%	39.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3603694	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.52	41.0	3.44e-01	89.9%	75.4%

D4 medium residues 141-254_378-397_832-840

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	177.0	5.90e-52	79.7%	8.8%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3f2bA05	6.10.50.10	Special › Helix non-globular › Insulin-like, subunit E ›	0.61	23.0	3.85e-01	100.0%	100.0%
5bn3A04	1.10.1140.10	Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3	0.51	40.0	4.10e-01	82.5%	87.1%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3416559	108.2.1.2 ↗	alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › OBP47_like	0.58	36.0	3.46e-01	72.7%	53.8%
3364567	524.1.1.1 ↗	alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC	0.53	27.0	2.82e-01	72.0%	52.3%

D5 medium residues 255-377

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009158901__Chobar_Gorge_virus__1679172__D209-255_289-364

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	201.9	1.90e-59	100.0%	9.5%

D6 medium residues 498-549_609-652

PDB

Domain cluster: rep: VP1__YP_009507705__Eubenangee_virus__40056__D500-531_630-654_715-732

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	97.4	6.20e-28	55.2%	4.0%
PF05788.19	Orbi_VP1	65.8	2.30e-18	47.9%	3.5%

D7 medium residues 550-608_722-831

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	216.8	5.70e-64	66.3%	8.5%
PF05788.19	Orbi_VP1	107.3	6.80e-31	35.5%	4.5%