RNA-dependent_RNA_polymerase

Euk-Vir

Rhizoctonia_solani_dsRNA_virus_2

RNA-dependent_RNA_polymerase__YP_009011230__Rhizoctonia_solani_dsRNA_virus_2__1411681

Identity

77.3 mean pLDDT

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Rhizoctonia_solani_dsRNA_virus_2

TaxID: 1411681

View cluster (450 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-73_500-614

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_656506__Raphanus_sativus_cryptic_virus_1__348449__D32-57_444-535

D2 medium residues 81-118_283-347_405-493

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

D3 medium residues 119-130_237-282_348-381

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2rp4A00	6.10.280.60	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain	0.60	31.0	3.52e-01	87.0%	64.8%
2r7rA05	1.10.357.80	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.58	52.0	4.21e-01	100.0%	63.1%
1skvA00	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.50	32.0	3.73e-01	87.0%	93.8%
2p4wA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	31.0	3.05e-01	87.0%	55.3%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5050929	4970.1.1.0 ↗	alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I	0.60	34.0	3.75e-01	87.0%	69.3%
5044642	2484.1.1.302 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB	0.56	41.0	2.99e-01	84.8%	27.5%
3920672	206.1.1.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase	0.55	41.0	4.19e-01	87.0%	80.0%
3936036	375.10.1.1 ↗	few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol	0.53	40.0	3.76e-01	81.5%	80.0%
3695052	109.4.1.363 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tcf25	0.53	44.0	2.84e-01	94.6%	72.7%
3627202	375.10.1.1 ↗	few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol	0.51	37.0	3.54e-01	77.2%	69.1%

D4 medium residues 131-231

PDB