RNA-dependent_RNA_polymerase

Euk-Vir

Umatilla_virus

RNA-dependent_RNA_polymerase__YP_009047258__Umatilla_virus__40060

Identity

87.7 mean pLDDT

View cluster (29 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-69_880-904

PDB

Domain cluster: representative

D2 medium residues 70-244_849-867

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	178.8	1.70e-52	91.8%	13.2%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3r4iA02	6.10.140.960	Special › Helix non-globular › Helix Hairpins ›	0.57	17.0	3.03e-01	78.9%	81.7%
5b2nA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	37.0	3.32e-01	73.2%	98.5%
3nz4B03	1.10.274.20	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3	0.50	24.0	3.03e-01	100.0%	75.0%
3tdvA02	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.50	36.0	3.60e-01	73.2%	91.3%
5t3wA00	1.20.120.1160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.50	31.0	3.52e-01	76.8%	83.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3424617	611.9.1.4 ↗	alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N	0.53	31.0	3.68e-01	90.2%	83.0%

D3 medium residues 245-268_298-375

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009158901__Chobar_Gorge_virus__1679172__D209-255_289-364

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	67.4	7.50e-19	78.4%	5.9%
PF05788.19	Orbi_VP1	31.9	3.80e-08	26.5%	1.8%

D4 medium residues 376-413_644-723

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	64.6	5.30e-18	70.3%	6.1%
PF05788.19	Orbi_VP1	40.0	1.40e-10	33.1%	2.7%

D5 medium residues 414-450_473-548_600-643

PDB

Domain cluster: rep: VP1__YP_009507705__Eubenangee_virus__40056__D405-452_477-499_532-575_601-629

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	126.4	1.10e-36	50.3%	5.9%
PF05788.19	Orbi_VP1	55.4	3.00e-15	29.3%	3.4%
PF05788.19	Orbi_VP1	45.4	3.30e-12	24.2%	2.8%